View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1078_high_6 (Length: 348)

Name: NF1078_high_6
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1078_high_6
NF1078_high_6
[»] chr2 (45 HSPs)
chr2 (29-282)||(4237302-4237567)
chr2 (182-285)||(42094252-42094354)
chr2 (198-287)||(18719734-18719823)
chr2 (195-284)||(16209375-16209464)
chr2 (182-287)||(25666845-25666950)
chr2 (284-348)||(4237181-4237242)
chr2 (189-255)||(42029421-42029487)
chr2 (194-287)||(1930669-1930762)
chr2 (182-287)||(3466434-3466539)
chr2 (210-282)||(1469791-1469863)
chr2 (204-286)||(33069215-33069297)
chr2 (195-287)||(42029342-42029434)
chr2 (198-285)||(37810195-37810282)
chr2 (195-278)||(44247538-44247621)
chr2 (195-285)||(2683425-2683515)
chr2 (182-289)||(12703459-12703566)
chr2 (178-285)||(40358633-40358740)
chr2 (195-282)||(42251163-42251250)
chr2 (198-285)||(45300416-45300503)
chr2 (197-255)||(33171678-33171736)
chr2 (188-262)||(39090371-39090445)
chr2 (179-241)||(41496043-41496105)
chr2 (190-255)||(15194530-15194595)
chr2 (186-255)||(37810137-37810206)
chr2 (195-255)||(25666798-25666858)
chr2 (182-241)||(6979090-6979148)
chr2 (188-242)||(1469732-1469786)
chr2 (231-281)||(15194588-15194638)
chr2 (183-243)||(9430228-9430288)
chr2 (194-242)||(12779742-12779790)
chr2 (182-254)||(35715053-35715125)
chr2 (195-255)||(42251242-42251302)
chr2 (224-283)||(9430166-9430225)
chr2 (244-283)||(17383811-17383850)
chr2 (182-253)||(33069154-33069225)
chr2 (182-241)||(44487245-44487304)
chr2 (202-280)||(41496113-41496191)
chr2 (210-280)||(44486987-44487056)
chr2 (228-265)||(6979001-6979038)
chr2 (190-255)||(40358729-40358794)
chr2 (179-255)||(2302043-2302117)
chr2 (228-280)||(2302111-2302163)
chr2 (195-259)||(30841009-30841073)
chr2 (204-260)||(33171608-33171664)
chr2 (218-278)||(36283538-36283598)
[»] chr8 (36 HSPs)
chr8 (182-285)||(40694662-40694765)
chr8 (194-282)||(40175946-40176034)
chr8 (194-281)||(34504430-34504517)
chr8 (188-285)||(42072655-42072750)
chr8 (208-285)||(40696201-40696278)
chr8 (195-287)||(4994155-4994247)
chr8 (182-259)||(40566531-40566608)
chr8 (182-269)||(38357556-38357643)
chr8 (182-243)||(20271104-20271165)
chr8 (182-243)||(21057732-21057793)
chr8 (210-287)||(26018507-26018584)
chr8 (178-270)||(17893381-17893472)
chr8 (208-279)||(13260405-13260476)
chr8 (182-283)||(8402529-8402628)
chr8 (182-255)||(36009901-36009974)
chr8 (208-283)||(2171011-2171087)
chr8 (199-283)||(2478469-2478553)
chr8 (182-281)||(1806221-1806319)
chr8 (210-285)||(35586419-35586493)
chr8 (197-280)||(38835002-38835085)
chr8 (204-285)||(27072825-27072905)
chr8 (190-255)||(27072894-27072959)
chr8 (194-278)||(2288598-2288682)
chr8 (193-277)||(20271006-20271090)
chr8 (193-277)||(21057634-21057718)
chr8 (179-255)||(35586482-35586558)
chr8 (182-256)||(17893304-17893378)
chr8 (192-278)||(21125006-21125092)
chr8 (195-265)||(43042139-43042208)
chr8 (206-255)||(30262769-30262818)
chr8 (195-255)||(40175893-40175954)
chr8 (188-270)||(13772458-13772539)
chr8 (204-242)||(34504386-34504424)
chr8 (182-256)||(40694600-40694674)
chr8 (182-256)||(40696266-40696340)
chr8 (189-252)||(30649944-30650005)
[»] chr3 (42 HSPs)
chr3 (180-287)||(14345198-14345306)
chr3 (182-285)||(36480756-36480859)
chr3 (179-282)||(19560613-19560716)
chr3 (179-261)||(3901566-3901647)
chr3 (182-278)||(29955025-29955121)
chr3 (182-278)||(30004179-30004275)
chr3 (179-287)||(31205353-31205461)
chr3 (183-287)||(32880985-32881089)
chr3 (195-286)||(11532483-11532574)
chr3 (191-278)||(16729169-16729256)
chr3 (194-285)||(51541294-51541385)
chr3 (198-287)||(40763415-40763504)
chr3 (179-287)||(19554370-19554478)
chr3 (192-277)||(1753313-1753398)
chr3 (209-266)||(35527125-35527182)
chr3 (210-282)||(35357369-35357441)
chr3 (182-282)||(36007407-36007507)
chr3 (179-255)||(36480691-36480767)
chr3 (179-277)||(37341212-37341305)
chr3 (179-254)||(35415049-35415124)
chr3 (195-261)||(3901499-3901565)
chr3 (218-284)||(19158682-19158748)
chr3 (195-287)||(4277026-4277118)
chr3 (195-255)||(32881076-32881136)
chr3 (178-261)||(37189129-37189210)
chr3 (198-277)||(48543439-48543518)
chr3 (189-255)||(33244683-33244749)
chr3 (197-242)||(799147-799192)
chr3 (190-255)||(14345146-14345211)
chr3 (229-278)||(40554072-40554121)
chr3 (179-238)||(1458633-1458692)
chr3 (190-265)||(26986288-26986363)
chr3 (195-238)||(29955134-29955177)
chr3 (195-238)||(30004288-30004331)
chr3 (218-280)||(9145440-9145502)
chr3 (195-268)||(40117728-40117799)
chr3 (232-282)||(45332596-45332646)
chr3 (198-283)||(13540179-13540264)
chr3 (190-243)||(19158749-19158802)
chr3 (179-220)||(36026904-36026945)
chr3 (198-247)||(40117813-40117862)
chr3 (210-243)||(50003626-50003659)
[»] chr4 (40 HSPs)
chr4 (178-285)||(2324741-2324848)
chr4 (182-287)||(21433920-21434025)
chr4 (188-285)||(33413996-33414093)
chr4 (190-281)||(15134562-15134653)
chr4 (182-287)||(45654058-45654163)
chr4 (195-287)||(16457920-16458012)
chr4 (179-278)||(52374901-52375000)
chr4 (179-285)||(9023894-9024000)
chr4 (198-287)||(31758690-31758779)
chr4 (183-255)||(21433861-21433933)
chr4 (195-269)||(993219-993291)
chr4 (195-270)||(3688570-3688645)
chr4 (188-285)||(51577997-51578094)
chr4 (179-278)||(2247635-2247732)
chr4 (198-264)||(19382300-19382366)
chr4 (195-285)||(25592245-25592335)
chr4 (224-285)||(17181268-17181329)
chr4 (190-249)||(7403168-7403227)
chr4 (182-255)||(41840580-41840653)
chr4 (179-255)||(15134646-15134722)
chr4 (179-262)||(32286218-32286299)
chr4 (204-287)||(38036246-38036327)
chr4 (190-266)||(42516513-42516589)
chr4 (180-255)||(16577238-16577313)
chr4 (204-255)||(32286310-32286361)
chr4 (190-240)||(2247575-2247625)
chr4 (182-236)||(17508752-17508806)
chr4 (228-284)||(53127995-53128051)
chr4 (179-242)||(3688663-3688726)
chr4 (198-284)||(24976234-24976320)
chr4 (64-154)||(27926882-27926972)
chr4 (194-244)||(34119639-34119689)
chr4 (195-241)||(52375010-52375056)
chr4 (190-278)||(1338428-1338514)
chr4 (206-255)||(41840671-41840720)
chr4 (192-277)||(48791229-48791314)
chr4 (182-242)||(993289-993349)
chr4 (182-218)||(16458035-16458071)
chr4 (179-255)||(34252005-34252080)
chr4 (230-278)||(38338561-38338609)
[»] chr7 (32 HSPs)
chr7 (179-287)||(47497747-47497855)
chr7 (182-285)||(12275787-12275890)
chr7 (179-284)||(10056673-10056778)
chr7 (195-288)||(11201293-11201386)
chr7 (182-281)||(26862966-26863065)
chr7 (188-285)||(40134435-40134530)
chr7 (182-280)||(49106960-49107057)
chr7 (189-282)||(316411-316504)
chr7 (198-283)||(2276328-2276413)
chr7 (195-280)||(7017140-7017225)
chr7 (195-280)||(7032498-7032583)
chr7 (179-255)||(3235543-3235619)
chr7 (198-277)||(46074112-46074191)
chr7 (194-255)||(2276276-2276337)
chr7 (198-287)||(3235606-3235695)
chr7 (198-283)||(18089753-18089838)
chr7 (182-270)||(26647754-26647842)
chr7 (182-285)||(5443579-5443681)
chr7 (188-262)||(24516549-24516623)
chr7 (190-283)||(31042134-31042228)
chr7 (182-282)||(25644452-25644550)
chr7 (194-242)||(10056622-10056670)
chr7 (182-285)||(5452624-5452726)
chr7 (183-242)||(40803235-40803294)
chr7 (209-283)||(7526169-7526243)
chr7 (194-244)||(26647690-26647740)
chr7 (198-255)||(36129071-36129129)
chr7 (229-287)||(36992857-36992915)
chr7 (191-260)||(16357139-16357208)
chr7 (182-214)||(5443517-5443549)
chr7 (182-214)||(5452562-5452594)
chr7 (210-270)||(29356932-29356992)
[»] chr1 (38 HSPs)
chr1 (187-284)||(31970170-31970267)
chr1 (195-281)||(731383-731468)
chr1 (183-285)||(38663639-38663741)
chr1 (182-268)||(34437663-34437749)
chr1 (195-270)||(34437598-34437673)
chr1 (183-284)||(38948080-38948181)
chr1 (182-285)||(7444268-7444371)
chr1 (209-287)||(23317923-23318001)
chr1 (190-255)||(2542697-2542762)
chr1 (194-287)||(49403471-49403564)
chr1 (198-278)||(40374093-40374172)
chr1 (208-283)||(2542753-2542828)
chr1 (190-256)||(21281472-21281539)
chr1 (204-255)||(49403551-49403602)
chr1 (190-287)||(5695673-5695767)
chr1 (198-282)||(40668932-40669016)
chr1 (188-267)||(51810766-51810842)
chr1 (188-255)||(16257603-16257670)
chr1 (194-241)||(31970119-31970166)
chr1 (99-153)||(40154312-40154365)
chr1 (182-255)||(40669008-40669079)
chr1 (204-278)||(45925164-45925238)
chr1 (179-281)||(939316-939420)
chr1 (182-255)||(7444360-7444433)
chr1 (194-255)||(49822607-49822668)
chr1 (214-282)||(31839404-31839472)
chr1 (195-255)||(38663730-38663790)
chr1 (195-255)||(45215406-45215466)
chr1 (248-283)||(18075217-18075252)
chr1 (204-283)||(31851911-31851989)
chr1 (199-282)||(45215332-45215414)
chr1 (192-287)||(45563063-45563158)
chr1 (182-236)||(15366488-15366542)
chr1 (187-277)||(34783404-34783494)
chr1 (212-277)||(644881-644946)
chr1 (187-243)||(16661807-16661863)
chr1 (247-283)||(33422683-33422719)
chr1 (195-243)||(35752133-35752181)
[»] chr5 (31 HSPs)
chr5 (198-285)||(3907703-3907792)
chr5 (198-287)||(25545265-25545354)
chr5 (183-282)||(27195304-27195402)
chr5 (182-287)||(36059254-36059359)
chr5 (179-242)||(17474865-17474928)
chr5 (179-270)||(32309661-32309752)
chr5 (182-255)||(22399757-22399830)
chr5 (187-255)||(40773115-40773183)
chr5 (179-287)||(42420001-42420109)
chr5 (212-287)||(22399817-22399892)
chr5 (183-284)||(38029531-38029629)
chr5 (190-255)||(33029489-33029554)
chr5 (182-255)||(4190138-4190213)
chr5 (188-255)||(25545213-25545278)
chr5 (199-270)||(13122043-13122114)
chr5 (195-270)||(43461961-43462036)
chr5 (182-255)||(3907643-3907714)
chr5 (190-255)||(41169469-41169534)
chr5 (210-282)||(41169405-41169477)
chr5 (69-136)||(9949116-9949183)
chr5 (208-287)||(31273084-31273163)
chr5 (204-255)||(33029573-33029624)
chr5 (220-270)||(41106470-41106520)
chr5 (182-244)||(42420107-42420169)
chr5 (190-282)||(3416257-3416350)
chr5 (195-280)||(4158133-4158218)
chr5 (208-285)||(4190072-4190149)
chr5 (187-243)||(28907360-28907416)
chr5 (187-243)||(28943755-28943811)
chr5 (186-222)||(40927611-40927647)
chr5 (182-242)||(42249397-42249457)
[»] scaffold0003 (1 HSPs)
scaffold0003 (188-283)||(136372-136467)
[»] chr6 (26 HSPs)
chr6 (182-269)||(1473602-1473689)
chr6 (182-281)||(4483355-4483452)
chr6 (179-269)||(28865394-28865484)
chr6 (194-287)||(12731601-12731694)
chr6 (179-278)||(4033043-4033147)
chr6 (195-281)||(3150209-3150295)
chr6 (228-285)||(11650922-11650979)
chr6 (228-282)||(6643367-6643421)
chr6 (188-238)||(12424886-12424935)
chr6 (213-261)||(3625135-3625183)
chr6 (218-282)||(26328213-26328277)
chr6 (182-238)||(31946914-31946970)
chr6 (195-269)||(9202574-9202648)
chr6 (182-283)||(479854-479954)
chr6 (182-242)||(5706711-5706771)
chr6 (182-269)||(19711625-19711712)
chr6 (188-278)||(9644973-9645063)
chr6 (188-278)||(9650990-9651080)
chr6 (182-240)||(17389991-17390049)
chr6 (179-255)||(11650968-11651045)
chr6 (198-255)||(12731557-12731614)
chr6 (179-244)||(17600695-17600760)
chr6 (228-281)||(31945680-31945733)
chr6 (188-277)||(31989191-31989280)
chr6 (218-270)||(5706641-5706693)
chr6 (219-287)||(24783890-24783958)
[»] scaffold0137 (1 HSPs)
scaffold0137 (179-268)||(8246-8334)
[»] scaffold0015 (2 HSPs)
scaffold0015 (179-265)||(201026-201112)
scaffold0015 (178-255)||(200941-201018)


Alignment Details
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 45)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 29 - 282
Target Start/End: Complemental strand, 4237567 - 4237302
Alignment:
Q  29 agttttaaaccggtggcaactaaaaaactgtgtctcgatgcactatttggttgtggaaagagaagttagtaattccagctttactccaaacgtgcgttaa 128  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||  ||||||||||||    
T  4237567 agttttaaaccggtggcaactaaaaaattgtgtcccgatgcactatttggtcgtggaaagagaagttaggaattccagctttactctgaacgtgcgttaa 4237468  T
Q  129 gcccttcctaccactaaaccaaacatatgcataataaattaaggaaggaataa-----------caacatacattttaac-acacacttttcaacacact 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |            || |   || ||| | ||| || ||| ||||||||    
T  4237467 gcccttcctaccactaaaccaaacatatgcataataaattaaggagggaatgatagataagattgaagaggaatgttagcaacatacattttaacacact 4237368  T
Q  217 cttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgg 282  Q
     ||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  4237367 ttttttgattagttaaaattcacatgggtaccaccaaatcatgtgggtcccatacaaatttggtgg 4237302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 182 - 285
Target Start/End: Complemental strand, 42094354 - 42094252
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtg 281  Q
    ||||| |||||||||||||||||||||||||||| || ||| ||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  42094354 caacacacattttaacacacacttttcaacacacactctttgattggttaaaattcacatg-gtcccaccaaatcatgtgggtcccatataaatttggtg 42094256  T
Q  282 ggtc 285  Q
    ||||    
T  42094255 ggtc 42094252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 198 - 287
Target Start/End: Original strand, 18719734 - 18719823
Alignment:
Q  198 acacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtctc 287  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||| |||| |||||||||||||||||||||||| ||||||| ||||||||    
T  18719734 acacatttttcaacacactctttttgattggttaaaattcacacgagttccaccaaatcatgtgggtcccatataaatttgatgggtctc 18719823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 16209375 - 16209464
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggt 284  Q
    |||||||||||| ||||||||||| ||| ||| |||||||||||||||||| |||||||||  ||| ||||||||| |||||||||||||    
T  16209375 aacacacactttccaacacactctctttaattggttaaaattcacatgagttccaccaaattttgtcggtcccatataaatttggtgggt 16209464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 182 - 287
Target Start/End: Complemental strand, 25666950 - 25666845
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtg 281  Q
    ||||| ||||||||||| ||| ||||||||||||||| ||| ||  |||||||| ||||||  |||||||||||||||| ||| ||||| ||||||||||    
T  25666950 caacacacattttaacatacaattttcaacacactctctttgatgtgttaaaatccacatggatcccaccaaatcatgtaggttccatataaatttggtg 25666851  T
Q  282 ggtctc 287  Q
    ||||||    
T  25666850 ggtctc 25666845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 284 - 348
Target Start/End: Complemental strand, 4237242 - 4237181
Alignment:
Q  284 tctctatgattaaataataccaattaatgttgattggttgagtgtttgagaaagagttgtaacac 348  Q
    ||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  4237242 tctctatgattaaata---ccaattaatgttgattggttgagtgtttgagaaagagttgtaacac 4237181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 42029487 - 42029421
Alignment:
Q  189 cattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  42029487 cattctaacacacacttttcaacacacttttttttattggttaaaattcacatgagacccaccaaat 42029421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 287
Target Start/End: Original strand, 1930669 - 1930762
Alignment:
Q  194 taacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtctc 287  Q
    ||||||||| ||||||| ||||||||||| ||| ||||||||||||||  || ||| ||||| |||||||||||||| ||||||||| ||||||    
T  1930669 taacacacatttttcaagacactctttttgattggttaaaattcacatatgttccatcaaattatgtgggtcccatataaatttggtaggtctc 1930762  T

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Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 287
Target Start/End: Complemental strand, 3466539 - 3466434
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtg 281  Q
    ||||| |||||||||||||||||||  |||| | ||| ||| ||| ||||||||||||||| || |||| ||||| |||||||||||||  |||||||||    
T  3466539 caacacacattttaacacacactttcaaacatagtctctttgattggttaaaattcacatgggttccactaaatcgtgtgggtcccatatgaatttggtg 3466440  T
Q  282 ggtctc 287  Q
    ||||||    
T  3466439 ggtctc 3466434  T

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Target: chr2; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 1469863 - 1469791
Alignment:
Q  210 acacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgg 282  Q
    ||||||| ||||||||| |||||||||||||||  |||||| ||||||||||||||||||| |||||||||||    
T  1469863 acacacttttttttattggttaaaattcacatggatcccacaaaatcatgtgggtcccatataaatttggtgg 1469791  T

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Target: chr2; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 33069297 - 33069215
Alignment:
Q  204 ttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtct 286  Q
    ||||||||||||||||||| ||| ||||||| |||| || ||||||| |||| |||||||||||||| ||| |||||||||||    
T  33069297 ttttcaacacactctttttgattggttaaaaatcacttgggtcccactaaattatgtgggtcccatataaacttggtgggtct 33069215  T

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Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 287
Target Start/End: Original strand, 42029342 - 42029434
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtctc 287  Q
    |||||||| ||||||||||||| | ||| ||| ||||||||||| ||| |||| ||||||||||| ||  |||||| ||||||||||||||||    
T  42029342 aacacacatttttcaacacactgtatttgatttgttaaaattcatatgggtcctaccaaatcatgcggaccccatataaatttggtgggtctc 42029434  T

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Target: chr2; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 37810282 - 37810195
Alignment:
Q  198 acacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtc 285  Q
    ||||||||| || |||||||  ||| ||| ||||||||||||||| |||||||||||| |  ||||||||||| ||||||||||||||    
T  37810282 acacactttccatcacactcactttgattggttaaaattcacatgggtcccaccaaattagatgggtcccatataaatttggtgggtc 37810195  T

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Target: chr2; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 195 - 278
Target Start/End: Original strand, 44247538 - 44247621
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttg 278  Q
    |||||||| ||||||||| ||| | ||| ||| ||| ||||||||||| || ||||||||| ||||||||||||||||||||||    
T  44247538 aacacacatttttcaacaaactatctttgattggttgaaattcacatgggttccaccaaattatgtgggtcccatacaaatttg 44247621  T

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Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 285
Target Start/End: Complemental strand, 2683515 - 2683425
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtc 285  Q
    |||||||||||||||  ||||||||||| ||| ||||||||| | ||| || ||||||||||||||||||||  || ||||| ||||||||    
T  2683515 aacacacacttttcacgacactctttttgattggttaaaatttatatgggttccaccaaatcatgtgggtccagtataaattcggtgggtc 2683425  T

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Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 289
Target Start/End: Original strand, 12703459 - 12703566
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtg 281  Q
    ||||| ||||||||||||||| ||||||| ||||| | ||| ||| ||||| |||||||||||| ||| |||||||| ||  | ||||| |||| | |||    
T  12703459 caacacacattttaacacacatttttcaatacactttctttgattggttaatattcacatgagttccatcaaatcatctgaattccatataaatatagtg 12703558  T
Q  282 ggtctcta 289  Q
    ||||||||    
T  12703559 ggtctcta 12703566  T

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Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 285
Target Start/End: Original strand, 40358633 - 40358740
Alignment:
Q  178 ataacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaattt 277  Q
    ||||||||| |||||||||||||||||||  || ||| ||  ||| ||  || ||||||||||||||||||| ||||| ||||| |||||||   |||||    
T  40358633 ataacaacacacattttaacacacactttctaatacattcgctttgatctgtcaaaattcacatgagtcccatcaaattatgtgagtcccatgttaattt 40358732  T
Q  278 ggtgggtc 285  Q
    ||||||||    
T  40358733 ggtgggtc 40358740  T

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Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 282
Target Start/End: Original strand, 42251163 - 42251250
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgg 282  Q
    |||||||| ||||| ||||||||| ||| ||  |||||||||| |||| |||||||||||| ||||||| || ||| |||||||||||    
T  42251163 aacacacatttttcgacacactctctttgatcggttaaaattcgcatgggtcccaccaaattatgtgggacctatataaatttggtgg 42251250  T

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Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 45300503 - 45300416
Alignment:
Q  198 acacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtc 285  Q
    ||||||||||||| ||||||||||| ||| |||||||||||||||  | ||| ||||| || ||||||||||| | |||| |||||||    
T  45300503 acacacttttcaatacactctttttgattggttaaaattcacatggattccatcaaattatatgggtcccatatagatttagtgggtc 45300416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 33171736 - 33171678
Alignment:
Q  197 cacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    |||||||||||||||||||||| ||| ||| |||||| |||||||| ||||||||||||    
T  33171736 cacacacttttcaacacactctctttgattggttaaatttcacatgggtcccaccaaat 33171678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 39090371 - 39090445
Alignment:
Q  188 acattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgg 262  Q
    |||||||||| || ||||||||||||| ||| |||||||  |||||||| | |||||| ||||||||||||||||    
T  39090371 acattttaacccatacttttcaacacaatctattttattgcttaaaatttatatgagttccaccaaatcatgtgg 39090445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 41496043 - 41496105
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacat 241  Q
    |||||||||| ||||||||||||||||||||| ||||| | ||| ||| ||||||||||||||    
T  41496043 taacaacatatattttaacacacacttttcaatacactatctttgattggttaaaattcacat 41496105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 15194530 - 15194595
Alignment:
Q  190 attttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||||||| |||||||||| |||||||||||| ||| ||||||| ||||||| ||| ||||||||    
T  15194530 attttaacatacacttttcagcacactctttttgattggttaaaagtcacatgggtcgcaccaaat 15194595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 37810137 - 37810206
Alignment:
Q  186 atacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    |||||||||||| || ||||||||||||||||| ||| ||| |||| |||||||||| | ||||||||||    
T  37810137 atacattttaactcatacttttcaacacactctctttgattggttataattcacatgggacccaccaaat 37810206  T

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Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 25666798 - 25666858
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    |||||||| ||||||||||||||| ||| |||  |||||||||||||||| ||||||||||    
T  25666798 aacacacatttttcaacacactctatttgattgattaaaattcacatgagacccaccaaat 25666858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 6979148 - 6979090
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacat 241  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||| ||||||||| ||||    
T  6979148 caacacacattttaacacacacttttcaacaca-ttttttttattggttaaaatttacat 6979090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 1469732 - 1469786
Alignment:
Q  188 acattttaacacacacttttcaacacactcttttttattagttaaaattcacatg 242  Q
    ||||||||||||| | ||||||||||||||| ||| ||| |||||||||||||||    
T  1469732 acattttaacacatatttttcaacacactctatttaattggttaaaattcacatg 1469786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 15194638 - 15194588
Alignment:
Q  231 aaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtg 281  Q
    |||||||||||| ||||||||||||||||| ||||||||| | ||||||||    
T  15194638 aaaattcacatgtgtcccaccaaatcatgtcggtcccatatatatttggtg 15194588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 9430288 - 9430228
Alignment:
Q  183 aacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatga 243  Q
    |||| ||||| ||||||||||||||||||| | ||| ||| ||| ||||||||||||||||    
T  9430288 aacacacattctaacacacacttttcaacatattctatttgattggttaaaattcacatga 9430228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 12779790 - 12779742
Alignment:
Q  194 taacacacacttttcaacacactcttttttattagttaaaattcacatg 242  Q
    ||||||||||||  ||||||||||||||| ||| |||||||||||||||    
T  12779790 taacacacacttaccaacacactctttttaattggttaaaattcacatg 12779742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 35715125 - 35715053
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaa 254  Q
    ||||| ||||||||| ||||||||||||| ||||||| ||| ||| ||||||||| ||||  |||||| ||||    
T  35715125 caacacacattttaagacacacttttcaatacactctctttgattggttaaaatttacataggtcccatcaaa 35715053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 42251302 - 42251242
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    |||||||||||||||||||||||| ||| |||  |||||||||||||| |  |||||||||    
T  42251302 aacacacacttttcaacacactctctttgattgattaaaattcacatgggatccaccaaat 42251242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 283
Target Start/End: Original strand, 9430166 - 9430225
Alignment:
Q  224 attagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtggg 283  Q
    ||||||||||||| | ||   ||| |||||||||||||||||||||||||||||| ||||    
T  9430166 attagttaaaatttatatagatcctaccaaatcatgtgggtcccatacaaatttgatggg 9430225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 283
Target Start/End: Complemental strand, 17383850 - 17383811
Alignment:
Q  244 gtcccaccaaatcatgtgggtcccatacaaatttggtggg 283  Q
    |||||||||||| |||||||||||||| ||||||||||||    
T  17383850 gtcccaccaaattatgtgggtcccatagaaatttggtggg 17383811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 253
Target Start/End: Original strand, 33069154 - 33069225
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaa 253  Q
    ||||| ||||| || |||||||||||||||||||| | ||| ||  |||||||||||||| || ||||||||    
T  33069154 caacacacattctatcacacacttttcaacacactttctttgatcggttaaaattcacattagacccaccaa 33069225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 44487304 - 44487245
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacat 241  Q
    ||||||| |||||| ||||||||||| || ||||||||||| ||  ||||||||||||||    
T  44487304 caacatatattttaccacacactttttaatacactctttttgatcggttaaaattcacat 44487245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 280
Target Start/End: Complemental strand, 41496191 - 41496113
Alignment:
Q  202 acttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggt 280  Q
    |||||| |||||| ||||||| |||  |||||||||||||| ||| ||| |||||| |||||| | ||| |||||||||    
T  41496191 acttttaaacacattctttttgattgattaaaattcacatgggtcacactaaatcaagtgggttctatataaatttggt 41496113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 280
Target Start/End: Complemental strand, 44487056 - 44486987
Alignment:
Q  210 acacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggt 280  Q
    ||||||||| ||| ||| |||| ||||| |||||||||||| ||||||| |||| |||||| |||||||||    
T  44487056 acacactctctttgattggttacaattcgcatgagtcccactaaatcatatggg-cccatataaatttggt 44486987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 6979001 - 6979038
Alignment:
Q  228 gttaaaattcacatgagtcccaccaaatcatgtgggtc 265  Q
    |||||||||||||||||||| | |||||||||||||||    
T  6979001 gttaaaattcacatgagtcctatcaaatcatgtgggtc 6979038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 40358794 - 40358729
Alignment:
Q  190 attttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||||||||| | |||||||||| || ||||||||  ||||||||| ||||| | ||||||||||    
T  40358794 attttaacacataattttcaacaccctattttttataggttaaaatttacatgggacccaccaaat 40358729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 2302043 - 2302117
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||||||||  |||||||||| |||||||||||||| ||| || ||| ||||||| |||||| ||||| |||||||    
T  2302043 taacaacatattttttaacacatacttttcaacacac-cttcttgattggttaaaactcacat-agtccaaccaaat 2302117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 2302163 - 2302111
Alignment:
Q  228 gttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggt 280  Q
    |||||||||||||||| ||||| | |||||| || |||||||| |||||||||    
T  2302163 gttaaaattcacatgattcccatctaatcatatgagtcccatataaatttggt 2302111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 259
Target Start/End: Original strand, 30841009 - 30841073
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatg 259  Q
    |||||||| |||  |||| ||||||||| ||| ||||||||||| ||| |||| |||||||||||    
T  30841009 aacacacattttctaacatactctttttgattggttaaaattcatatgggtcctaccaaatcatg 30841073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 33171608 - 33171664
Alignment:
Q  204 ttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgt 260  Q
    ||||||||||||| | ||| |||  |||||||||| ||| |||||||||||||||||    
T  33171608 ttttcaacacactttctttgattgtttaaaattcatatgggtcccaccaaatcatgt 33171664  T

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Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 36283598 - 36283538
Alignment:
Q  218 ttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttg 278  Q
    |||||||||  ||||||||| |||  |||| ||||||||||||||| |||||| |||||||    
T  36283598 ttttttattgattaaaattcgcataggtcctaccaaatcatgtgggacccatataaatttg 36283538  T

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Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 182 - 285
Target Start/End: Complemental strand, 40694765 - 40694662
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtg 281  Q
    ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||||    
T  40694765 caacacacgttttaacacacacttttcaatacactcttttttattagttaaaattcacatgggtcccaccaaatcatgtgggtcctatatagatttggtg 40694666  T
Q  282 ggtc 285  Q
    ||||    
T  40694665 ggtc 40694662  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 40176034 - 40175946
Alignment:
Q  194 taacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgg 282  Q
    |||||||||||||| ||||||||| |||| ||| ||||||||||||||| |||||||||||| |||||||||||||| |||||||||||    
T  40176034 taacacacactttttaacacactccttttaattggttaaaattcacatgggtcccaccaaattatgtgggtcccatataaatttggtgg 40175946  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 194 - 281
Target Start/End: Complemental strand, 34504517 - 34504430
Alignment:
Q  194 taacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtg 281  Q
    ||||| ||||||||||||||||| ||||| ||| |||||||||| |||| ||| ||||||||||||||||||||||| ||||||||||    
T  34504517 taacatacacttttcaacacactttttttgattggttaaaattcgcatgggtcacaccaaatcatgtgggtcccatataaatttggtg 34504430  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 188 - 285
Target Start/End: Original strand, 42072655 - 42072750
Alignment:
Q  188 acattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtc 285  Q
    ||||||||||||||||||  ||||||||||| ||| ||| ||||| ||||||||| ||||||||||||||| |||||| |||| ||||||||||||||    
T  42072655 acattttaacacacactt--caacacactctctttgattggttaacattcacatgggtcccaccaaatcatatgggtctcatataaatttggtgggtc 42072750  T

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Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 208 - 285
Target Start/End: Original strand, 40696201 - 40696278
Alignment:
Q  208 caacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtc 285  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| | ||| | ||||||||||||    
T  40696201 caacacactctttttgattagttaaaattcacatgggtcccaccaaatcatgtgggttctatatagatttggtgggtc 40696278  T

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Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 287
Target Start/End: Original strand, 4994155 - 4994247
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtctc 287  Q
    |||||| | |||| |||| ||||||||| ||| ||||||||||  ||||||||||||||||||||||||||||||| |||||| |||||||||    
T  4994155 aacacatattttttaacatactctttttgattggttaaaattcttatgagtcccaccaaatcatgtgggtcccatataaattttgtgggtctc 4994247  T

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Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 40566608 - 40566531
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatg 259  Q
    ||||| ||||||||||||| | |||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||||    
T  40566608 caacacacattttaacacatatttttcaacacgctctttttgattggttaaaattcacatgagtctcaccaaatcatg 40566531  T

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Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 269
Target Start/End: Original strand, 38357556 - 38357643
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccat 269  Q
    ||||| ||||| || |||||||||| ||||||||||| ||| ||||||| ||| ||||||||| ||||||||||||||||||| ||||    
T  38357556 caacacacattctagcacacactttccaacacactctctttgattagttgaaactcacatgagacccaccaaatcatgtgggttccat 38357643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 20271165 - 20271104
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatga 243  Q
    ||||| |||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||    
T  20271165 caacacacattttaacacgcacttttcaacacactctctttgattagttaaaattcacatga 20271104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 21057793 - 21057732
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatga 243  Q
    ||||| |||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||    
T  21057793 caacacacattttaacacgcacttttcaacacactctctttgattagttaaaattcacatga 21057732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 26018584 - 26018507
Alignment:
Q  210 acacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtctc 287  Q
    |||||||||  || ||| ||||||||||||||| |||||| ||||| |||||||||||||| ||||||||||||||||    
T  26018584 acacactctccttgattggttaaaattcacatgggtcccatcaaattatgtgggtcccatataaatttggtgggtctc 26018507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 270
Target Start/End: Complemental strand, 17893472 - 17893381
Alignment:
Q  178 ataacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccata 270  Q
    ||||||||| ||||||||||||||| ||||||||| ||| ||||||||||||||||||   || | |||||||||||||||||| | ||||||    
T  17893472 ataacaacacacattttaacacacatttttcaacatact-ttttttattagttaaaatgtgcacgggtcccaccaaatcatgtgagacccata 17893381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 13260405 - 13260476
Alignment:
Q  208 caacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttgg 279  Q
    ||||||||| | ||||||| |||||||| |||||| |||||||||| |||||||||||||||| ||||||||    
T  13260405 caacacactatcttttattggttaaaatgcacatgggtcccaccaactcatgtgggtcccatataaatttgg 13260476  T

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Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 283
Target Start/End: Complemental strand, 8402628 - 8402529
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtg 281  Q
    ||||| |||||||||||||||||||||||||||  || ||| ||| ||||||| || |||| | |||||||||||||||||| ||||||  |||||| ||    
T  8402628 caacacacattttaacacacacttttcaacaca--ctatttgattggttaaaactctcatgggccccaccaaatcatgtgggacccatattaatttgttg 8402531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 36009974 - 36009901
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||| ||||||||||||||||||| ||||||||||| |||  || ||||||||||||||||  ||||||||||    
T  36009974 caacaaacattttaacacacactttccaacacactctctttggttggttaaaattcacatgacacccaccaaat 36009901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 2171011 - 2171087
Alignment:
Q  208 caacacactcttttttattagttaaaattcacatgagtcccacc-aaatcatgtgggtcccatacaaatttggtggg 283  Q
    ||||||||||| ||||||||||||||||| ||||| |||||||| |||| |||| || |||||| ||||||||||||    
T  2171011 caacacactctcttttattagttaaaatttacatgtgtcccaccaaaattatgtcggacccatataaatttggtggg 2171087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 283
Target Start/End: Complemental strand, 2478553 - 2478469
Alignment:
Q  199 cacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtggg 283  Q
    |||| |||||| || ||||||||||||  ||||||||| ||||| ||||||||||||||| || |||||||| || |||||||||    
T  2478553 cacatttttcatcatactcttttttatcggttaaaatttacatgggtcccaccaaatcatctgtgtcccatataattttggtggg 2478469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 281
Target Start/End: Complemental strand, 1806319 - 1806221
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtg 281  Q
    ||||| ||||||||||||| ||||||||||| ||| | ||| | ||||||||| |||| || ||||||||||| ||||||||  ||||| ||||||||||    
T  1806319 caacacacattttaacacatacttttcaacatactttatttcactagttaaaactcacttgggtcccaccaaaccatgtggg-gccatataaatttggtg 1806221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 285
Target Start/End: Original strand, 35586419 - 35586493
Alignment:
Q  210 acacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtc 285  Q
    ||||||||| ||| ||| ||||||||||||| | |||||||||||||||||| ||| |||| ||||||||||||||    
T  35586419 acacactctctttgattggttaaaattcacacg-gtcccaccaaatcatgtgagtctcatataaatttggtgggtc 35586493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 280
Target Start/End: Original strand, 38835002 - 38835085
Alignment:
Q  197 cacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggt 280  Q
    ||||||| |||||||||| ||| ||| |||   ||||||||||||| ||| |||||||||||| |||||||||| |||||||||    
T  38835002 cacacacatttcaacacattctctttgattgactaaaattcacatgggtctcaccaaatcatgcgggtcccatataaatttggt 38835085  T

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Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 285
Target Start/End: Original strand, 27072825 - 27072905
Alignment:
Q  204 ttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtc 285  Q
    ||||||||| ||| ||||||||| |||||||||||  |  ||| ||||||||||||||| ||||||| ||||||||||||||    
T  27072825 ttttcaacatact-ttttttattggttaaaattcatgtaggtctcaccaaatcatgtggatcccatataaatttggtgggtc 27072905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 27072959 - 27072894
Alignment:
Q  190 attttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||||||||||||||||||||||| ||||||| ||| ||||||||| ||||  | ||||||||||    
T  27072959 attttaacacacacttttcaacacattctttttgattggttaaaatttacattggacccaccaaat 27072894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 194 - 278
Target Start/End: Original strand, 2288598 - 2288682
Alignment:
Q  194 taacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttg 278  Q
    |||||||||||||  |||||||||| ||| ||| ||||||||| ||||| ||  ||||||||||  ||||||||||| |||||||    
T  2288598 taacacacactttcgaacacactctctttgattggttaaaatttacatgggtttcaccaaatcacatgggtcccatataaatttg 2288682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 277
Target Start/End: Original strand, 20271006 - 20271090
Alignment:
Q  193 ttaacacacacttttcaacacactcttttttattagttaaaa--ttcacatgagtcccaccaaatcatgtgggtcccatacaaattt 277  Q
    |||||||||| |||||||||| ||||||   ||| |||||||  ||||||||  |||||||||||||||||||||||||| ||||||    
T  20271006 ttaacacacatttttcaacactctctttg--attggttaaaaaattcacatggatcccaccaaatcatgtgggtcccatataaattt 20271090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 277
Target Start/End: Original strand, 21057634 - 21057718
Alignment:
Q  193 ttaacacacacttttcaacacactcttttttattagttaaaa--ttcacatgagtcccaccaaatcatgtgggtcccatacaaattt 277  Q
    |||||||||| |||||||||| ||||||   ||| |||||||  ||||||||  |||||||||||||||||||||||||| ||||||    
T  21057634 ttaacacacatttttcaacactctctttg--attggttaaaaaattcacatggatcccaccaaatcatgtgggtcccatataaattt 21057718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 35586558 - 35586482
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||| |||||||| ||||||||||||||||||||| ||| ||| |||  |||||||||||||  | ||||||||||    
T  35586558 taacatcatacattctaacacacacttttcaacacattctctttaattgattaaaattcacataggacccaccaaat 35586482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 256
Target Start/End: Original strand, 17893304 - 17893378
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatc 256  Q
    ||||| ||||||||||| ||| |||| |||| ||||| ||| ||||||||||| |||||||||| |||| |||||    
T  17893304 caacacacattttaacatacattttttaacagactctctttgattagttaaaactcacatgagttccactaaatc 17893378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 21125092 - 21125006
Alignment:
Q  192 tttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttg 278  Q
    ||||||||| |||||| |||||| ||| ||| |||  |||||||| ||||| ||| || |||||||||||| ||||||| |||||||    
T  21125092 tttaacacatactttttaacacattctatttgattgattaaaatttacatgggtctcatcaaatcatgtggatcccatataaatttg 21125006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 43042139 - 43042208
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtc 265  Q
    |||||||||||| |||| |||||| ||| |||  |||||||||||||| | ||||||||||||||||||||    
T  43042139 aacacacactttccaacgcactctctttgattgattaaaattcacatg-gccccaccaaatcatgtgggtc 43042208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 30262769 - 30262818
Alignment:
Q  206 ttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||||||| ||||||||||| ||||||||| | ||||||||||||||||    
T  30262769 ttcaacacattcttttttattggttaaaatttatatgagtcccaccaaat 30262818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 40175893 - 40175954
Alignment:
Q  195 aacacacacttttcaacacac-tcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||||||||||||||||||| | ||||||||| ||||||||||||||| |  |||||||||    
T  40175893 aacacacacttttcaacacactttttttttattggttaaaattcacatgggatccaccaaat 40175954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 13772539 - 13772458
Alignment:
Q  188 acattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccata 270  Q
    ||||||||||||| |||||| |||||| ||| ||| |||  |||||||||||| || | ||||||||| || |||||||||||    
T  13772539 acattttaacacaaacttttaaacacattctctttgattgattaaaattcacacga-ttccaccaaattatatgggtcccata 13772458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 242
Target Start/End: Original strand, 34504386 - 34504424
Alignment:
Q  204 ttttcaacacactcttttttattagttaaaattcacatg 242  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  34504386 ttttcaacacactctttttgattggttaaaattcacatg 34504424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 256
Target Start/End: Original strand, 40694600 - 40694674
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatc 256  Q
    ||||| || |||||||||||| ||| ||||||| ||| ||| ||| ||||||||| ||||| | |||||||||||    
T  40694600 caacacacgttttaacacacattttacaacacaatctatttgattggttaaaattaacatgcgacccaccaaatc 40694674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 40696340 - 40696266
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatc 256  Q
    ||||| || |||||||||||| ||| ||||||| ||| ||| ||| ||||||||| ||||| | |||||||||||    
T  40696340 caacacacgttttaacacacattttgcaacacaatctctttcattggttaaaattaacatgcgacccaccaaatc 40696266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 30649944 - 30650005
Alignment:
Q  189 cattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccacca 252  Q
    ||||||||| |||||||||||||||| ||  ||| ||| |||||||||||||||  ||||||||    
T  30649944 cattttaactcacacttttcaacacattc--tttgatttgttaaaattcacatggatcccacca 30650005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 180 - 287
Target Start/End: Complemental strand, 14345306 - 14345198
Alignment:
Q  180 aacaacatacattttaacacacacttttc-aacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttg 278  Q
    |||||||  ||||||||| |||||||| | ||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  14345306 aacaacacgcattttaacccacactttcccaacacactcttctttattcgttaaaattcacatgaatcccaccaaatcatgtgggtcccatataaatttg 14345207  T
Q  279 gtgggtctc 287  Q
    |||||||||    
T  14345206 gtgggtctc 14345198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 182 - 285
Target Start/End: Complemental strand, 36480859 - 36480756
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtg 281  Q
    ||||| |||||||||||||||||||||||||  |||| ||| ||| | ||||||||||||| ||||||||||||||||||||||||||| ||||||| ||    
T  36480859 caacacacattttaacacacacttttcaacattctctctttgattggctaaaattcacatgggtcccaccaaatcatgtgggtcccatataaatttgttg 36480760  T
Q  282 ggtc 285  Q
    ||||    
T  36480759 ggtc 36480756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 282
Target Start/End: Original strand, 19560613 - 19560716
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttg 278  Q
    |||||||||||||| |||| |||||||||||| ||||||  ||| ||| ||| ||||||| ||| ||||||||||||||||||||||||||||||||||     
T  19560613 taacaacatacattctaacgcacacttttcaatacactcgctttgattggttgaaattcatatgggtcccaccaaatcatgtgggtcccatacaaattta 19560712  T
Q  279 gtgg 282  Q
    ||||    
T  19560713 gtgg 19560716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 3901647 - 3901566
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtg 261  Q
    ||||||||||||||| |||||||||||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||    
T  3901647 taacaacatacattt-aacacacacttttcaacacactctctttgattggttaaaattcacatgggtcccaccaaatcatgtg 3901566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 182 - 278
Target Start/End: Original strand, 29955025 - 29955121
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttg 278  Q
    ||||||| ||||||| ||| ||||||||||||||| ||||| ||| ||||||||||||||| |||||| |||||||||||||||||| | |||||||    
T  29955025 caacatatattttaatacatacttttcaacacactttttttgattggttaaaattcacatgggtcccatcaaatcatgtgggtcccacataaatttg 29955121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 182 - 278
Target Start/End: Original strand, 30004179 - 30004275
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttg 278  Q
    ||||||| ||||||| ||| ||||||||||||||| ||||| ||| ||||||||||||||| |||||| |||||||||||||||||| | |||||||    
T  30004179 caacatatattttaatacatacttttcaacacactttttttgattggttaaaattcacatgggtcccatcaaatcatgtgggtcccacataaatttg 30004275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 287
Target Start/End: Original strand, 31205353 - 31205461
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttg 278  Q
    |||||||| || |||||||||| | ||| ||||||||||| ||| ||| ||||||||| ||||| |||  |||||||||||||||||||||| ||| |||    
T  31205353 taacaacacacgttttaacacatattttccaacacactctctttgattggttaaaatttacatgggtcttaccaaatcatgtgggtcccatataaaattg 31205452  T
Q  279 gtgggtctc 287  Q
    |||||||||    
T  31205453 gtgggtctc 31205461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 32880985 - 32881089
Alignment:
Q  183 aacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgg 282  Q
    |||| |||||||| |||||| ||||||||| |||||  || ||| ||||| ||||||||| ||||||| ||||||||||| ||||||| |||||||||||    
T  32880985 aacacacattttatcacacatttttcaacatactctccttgattggttaatattcacatgggtcccacaaaatcatgtggatcccatataaatttggtgg 32881084  T
Q  283 gtctc 287  Q
    |||||    
T  32881085 gtctc 32881089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 195 - 286
Target Start/End: Complemental strand, 11532574 - 11532483
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtct 286  Q
    ||||||||||||  |||||||||| ||| ||| ||||||||||||||| || |||||||||||||||| ||||||| |||||| ||||||||    
T  11532574 aacacacactttctaacacactctctttgattggttaaaattcacatgggttccaccaaatcatgtggatcccatataaatttagtgggtct 11532483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 278
Target Start/End: Original strand, 16729169 - 16729256
Alignment:
Q  191 ttttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttg 278  Q
    ||||||||| |||| ||||||| ||| ||||| |||||||||||| |||||||||||||||||||||| ||| ||||||  |||||||    
T  16729169 ttttaacacgcactcttcaacatactttttttgattagttaaaatgcacatgagtcccaccaaatcatatggatcccatttaaatttg 16729256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 285
Target Start/End: Complemental strand, 51541385 - 51541294
Alignment:
Q  194 taacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtc 285  Q
    ||||||| | ||||||| ||||| ||||| ||| ||||||||||| ||||||||||||||||||||||||||| ||| |  |||||||||||    
T  51541385 taacacatatttttcaatacactttttttgattggttaaaattcagatgagtcccaccaaatcatgtgggtcctatatacttttggtgggtc 51541294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 40763504 - 40763415
Alignment:
Q  198 acacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtctc 287  Q
    ||||||||||||||| ||||| ||| |||  ||||||||||| ||||| |||||||||||||||| ||||||| ||||||| ||| ||||    
T  40763504 acacacttttcaacatactctctttaatttattaaaattcacctgagttccaccaaatcatgtggatcccatataaatttgatggatctc 40763415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 287
Target Start/End: Original strand, 19554370 - 19554478
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttg 278  Q
    |||||||| ||||| |||||| ||||  |||| |||| || ||| |||  |||||||||| ||| ||||||||||| ||||||||||||||||||||||     
T  19554370 taacaacacacattctaacacgcactggtcaatacaccctctttgattgattaaaattcatatgggtcccaccaaaccatgtgggtcccatacaaattta 19554469  T
Q  279 gtgggtctc 287  Q
    | |||||||    
T  19554470 gagggtctc 19554478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 192 - 277
Target Start/End: Original strand, 1753313 - 1753398
Alignment:
Q  192 tttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaattt 277  Q
    ||||||| ||||||||||| | ||||||||| ||| ||||||||| ||||||||  || |||||||||||| ||||||| ||||||    
T  1753313 tttaacatacacttttcaatatactctttttgattggttaaaatttacatgagtttcatcaaatcatgtggttcccatataaattt 1753398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 35527182 - 35527125
Alignment:
Q  209 aacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcc 266  Q
    ||||||||| |||||||| |||||||||||||||  ||||||||||||||||||||||    
T  35527182 aacacactcatttttatttgttaaaattcacatggatcccaccaaatcatgtgggtcc 35527125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 35357441 - 35357369
Alignment:
Q  210 acacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgg 282  Q
    ||||||||| ||| ||| ||||||||||||||| |||| ||||||||||||  |||||||| |||||||||||    
T  35357441 acacactctctttgattggttaaaattcacatgggtcctaccaaatcatgtaagtcccatataaatttggtgg 35357369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 282
Target Start/End: Complemental strand, 36007507 - 36007407
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtg 281  Q
    ||||| |||||||||||  |||||||||||||| | | ||| | | ||||||||||||||||| |||   |||||||||||| |||||| ||||||||||    
T  36007507 caacacacattttaacattcacttttcaacacattttctttgagtggttaaaattcacatgagcccccataaatcatgtgggccccatataaatttggtg 36007408  T
Q  282 g 282  Q
    |    
T  36007407 g 36007407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 36480691 - 36480767
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    |||||||| |||||||||||||| |||| ||||||||||| ||| ||| ||||||||||||||| | |||| |||||    
T  36480691 taacaacacacattttaacacaccctttccaacacactctctttgattggttaaaattcacatgggacccaacaaat 36480767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 37341212 - 37341305
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaattt 277  Q
    |||||||| ||||||||||||||   |||| | ||| ||||||| ||||||||||||||||||| || ||||||||||||||||||| |||| ||||||    
T  37341212 taacaacacacattttaacacac---tttcca-acattctttttgattagttaaaattcacatgggt-ccaccaaatcatgtgggtctcatataaattt 37341305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 35415124 - 35415049
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaa 254  Q
    |||||||| ||||||||||||||||||||||||| |  |||||||||| |||||||||| |||  ||| |||||||    
T  35415124 taacaacacacattttaacacacacttttcaacatatacttttttatttgttaaaattcgcataggtcacaccaaa 35415049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 261
Target Start/End: Original strand, 3901499 - 3901565
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtg 261  Q
    |||||| | ||||||||||| ||| ||| ||| ||||||||||||||| ||||||||||||||||||    
T  3901499 aacacatatttttcaacacattctctttgattggttaaaattcacatgggtcccaccaaatcatgtg 3901565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 284
Target Start/End: Original strand, 19158682 - 19158748
Alignment:
Q  218 ttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggt 284  Q
    ||||| ||| ||||||||||||||||||||||| |||| ||||||||  |||| |||||||||||||    
T  19158682 tttttgattggttaaaattcacatgagtcccactaaattatgtgggtttcatataaatttggtgggt 19158748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 287
Target Start/End: Complemental strand, 4277118 - 4277026
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtctc 287  Q
    |||||||| ||||||||||||| | ||| |||  |||| ||| | ||| ||| ||  ||||||||||||||||||| ||||||||||||||||    
T  4277118 aacacacatttttcaacacactttctttgattgattaatatttatatgggtctcattaaatcatgtgggtcccatataaatttggtgggtctc 4277026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 32881136 - 32881076
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    |||||||| ||||||||||| ||||||||||| ||||||||| ||| ||| ||||||||||    
T  32881136 aacacacatttttcaacacaatcttttttattggttaaaatttacacgagacccaccaaat 32881076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 261
Target Start/End: Original strand, 37189129 - 37189210
Alignment:
Q  178 ataacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtg 261  Q
    ||||||||||||||||||||||||  ||||||  ||| | ||||||||||||||||||   || | ||||||||||||||||||    
T  37189129 ataacaacatacattttaacacacgtttttca--acatttttttttattagttaaaatgtgcacgggtcccaccaaatcatgtg 37189210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 277
Target Start/End: Complemental strand, 48543518 - 48543439
Alignment:
Q  198 acacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaattt 277  Q
    |||||| ||| || ||||||| ||| ||| ||||||||||||||||||| || ||||||| |||| ||||||| ||||||    
T  48543518 acacacattttaatacactctctttaattggttaaaattcacatgagtctcatcaaatcacgtggatcccatataaattt 48543439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 33244683 - 33244749
Alignment:
Q  189 cattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    |||||||| ||| | ||||||||||| | ||||||||| ||||||||||| ||||||| ||||||||    
T  33244683 cattttaatacatatttttcaacacattattttttattggttaaaattcaaatgagtctcaccaaat 33244749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 799147 - 799192
Alignment:
Q  197 cacacacttttcaacacactcttttttattagttaaaattcacatg 242  Q
    |||||||||||||||||||||| ||| ||||||| |||||||||||    
T  799147 cacacacttttcaacacactctctttaattagtttaaattcacatg 799192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 14345146 - 14345211
Alignment:
Q  190 attttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||||||||| | ||||||||||||| | ||| ||| |||||||| |||||||| ||||||||||    
T  14345146 attttaacacatatttttcaacacactttctttgattggttaaaatccacatgagacccaccaaat 14345211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 40554072 - 40554121
Alignment:
Q  229 ttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttg 278  Q
    |||||||||||||| |||||||||||||||||| | |||||| |||||||    
T  40554072 ttaaaattcacatgggtcccaccaaatcatgtgagacccatataaatttg 40554121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 1458692 - 1458633
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattca 238  Q
    |||||||| ||||| ||||| |||||||||||||||||||| || ||| ||| |||||||    
T  1458692 taacaacacacattctaacaaacacttttcaacacactcttcttgattggtttaaattca 1458633  T

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Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 265
Target Start/End: Original strand, 26986288 - 26986363
Alignment:
Q  190 attttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtc 265  Q
    ||||||||| | ||||||||||||| |||  || ||||||||||||||||||| |||| | ||||| || ||||||    
T  26986288 attttaacatatacttttcaacacattctccttgattagttaaaattcacatgggtcctatcaaattatatgggtc 26986363  T

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Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 29955177 - 29955134
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattca 238  Q
    |||||||||||||||| |||||||| || |||||||||||||||    
T  29955177 aacacacacttttcaatacactcttcttgattagttaaaattca 29955134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 30004331 - 30004288
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattca 238  Q
    |||||||||||||||| |||||||| || |||||||||||||||    
T  30004331 aacacacacttttcaatacactcttcttgattagttaaaattca 30004288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 9145440 - 9145502
Alignment:
Q  218 ttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggt 280  Q
    ||||||||| ||||||||||||||| |||||||||||| || || || ||| | |||||||||    
T  9145440 ttttttattggttaaaattcacatgggtcccaccaaatgatatgagttccagagaaatttggt 9145502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 40117728 - 40117799
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtccca 268  Q
    |||||||||||| |||||   | | ||||||| |||||||||||| ||  ||||||||||||||||||||||||    
T  40117728 aacacacactttccaacatcttttcttttattggttaaaattcacgtg--tcccaccaaatcatgtgggtccca 40117799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 45332646 - 45332596
Alignment:
Q  232 aaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgg 282  Q
    ||||| ||||| |||  |||||||||||||||||||||| |||||||||||    
T  45332646 aaatttacatgggtctgaccaaatcatgtgggtcccatataaatttggtgg 45332596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 283
Target Start/End: Original strand, 13540179 - 13540264
Alignment:
Q  198 acacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtggg 283  Q
    |||||| ||| |||||||||| ||| ||| ||| ||| | |||||  ||||||||||||||||| | || ||| ||||||||||||    
T  13540179 acacacattttaacacactctctttgattggtttaaactaacatggctcccaccaaatcatgtgagacctatataaatttggtggg 13540264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 19158802 - 19158749
Alignment:
Q  190 attttaacacacacttttcaacacactcttttttattagttaaaattcacatga 243  Q
    ||||||||  ||| ||||||| ||||||||||| ||||||||||||||| ||||    
T  19158802 attttaaccgacaattttcaatacactctttttgattagttaaaattcatatga 19158749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 36026945 - 36026904
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttt 220  Q
    |||||||| |||||||||||| |||||||||| |||||||||    
T  36026945 taacaacacacattttaacactcacttttcaatacactcttt 36026904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 40117862 - 40117813
Alignment:
Q  198 acacacttttcaacacactcttttttattagttaaaattcacatgagtcc 247  Q
    |||||||||||||||||||||| || ||| ||||||||||| ||| ||||    
T  40117862 acacacttttcaacacactcttattcattggttaaaattcaaatgggtcc 40117813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 243
Target Start/End: Complemental strand, 50003659 - 50003626
Alignment:
Q  210 acacactcttttttattagttaaaattcacatga 243  Q
    ||||||||||||||||||||||||||| ||||||    
T  50003659 acacactcttttttattagttaaaatttacatga 50003626  T

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Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 178 - 285
Target Start/End: Original strand, 2324741 - 2324848
Alignment:
Q  178 ataacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaattt 277  Q
    ||||||||| |||||||||| |||||||||||| | ||||| ||| ||| ||||||||||||||||||  ||||||||||||||||||||||| ||||||    
T  2324741 ataacaacacacattttaacgcacacttttcaatatactctctttgattggttaaaattcacatgagtttcaccaaatcatgtgggtcccatataaattt 2324840  T
Q  278 ggtgggtc 285  Q
    ||||||||    
T  2324841 ggtgggtc 2324848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 182 - 287
Target Start/End: Complemental strand, 21434025 - 21433920
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtg 281  Q
    ||||| ||||||||||| |||||||||||||||||||  || ||| |||||||||||||||  ||||||||||||||||||||| |||| ||||||||||    
T  21434025 caacacacattttaacatacacttttcaacacactctcattgattggttaaaattcacatggatcccaccaaatcatgtgggtctcatataaatttggtg 21433926  T
Q  282 ggtctc 287  Q
    ||||||    
T  21433925 ggtctc 21433920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 188 - 285
Target Start/End: Original strand, 33413996 - 33414093
Alignment:
Q  188 acattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtc 285  Q
    ||||| ||||||||||||||||||||||||| ||| ||| |||||||||||||||  ||||||||||||| |||||||| ||| ||||||||||||||    
T  33413996 acattgtaacacacacttttcaacacactctctttgattggttaaaattcacatggatcccaccaaatcacgtgggtcctatataaatttggtgggtc 33414093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 190 - 281
Target Start/End: Original strand, 15134562 - 15134653
Alignment:
Q  190 attttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtg 281  Q
    ||||||||||||| ||||||||||| ||| ||||||| ||||||||||||||| |||| || ||||||| ||||||||||| ||||||||||    
T  15134562 attttaacacacatttttcaacacattctcttttattggttaaaattcacatgggtccgactaaatcatttgggtcccatataaatttggtg 15134653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 182 - 287
Target Start/End: Complemental strand, 45654163 - 45654058
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtg 281  Q
    ||||||||||| ||||||| | |||| |||||||| ||||| ||| |||||||||||||||  ||||| |||||||||||||||||||| ||||||| |     
T  45654163 caacatacattctaacacatattttttaacacactttttttgattggttaaaattcacatggatcccatcaaatcatgtgggtcccatataaatttgata 45654064  T
Q  282 ggtctc 287  Q
    ||||||    
T  45654063 ggtctc 45654058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 287
Target Start/End: Original strand, 16457920 - 16458012
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtctc 287  Q
    |||||||| |||  |||||||||| ||| ||| |||||||||||||||  ||||| |||||||||||||||||||| ||||||||||||||||    
T  16457920 aacacacattttctaacacactctctttgattggttaaaattcacatggatcccatcaaatcatgtgggtcccatataaatttggtgggtctc 16458012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 179 - 278
Target Start/End: Original strand, 52374901 - 52375000
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttg 278  Q
    |||||||| ||||||||||||||||||||||||||||||| ||| ||   ||||||||||||||  || |||||||| ||||||||||| || |||||||    
T  52374901 taacaacacacattttaacacacacttttcaacacactctctttgatagattaaaattcacatggatctcaccaaattatgtgggtcccgtataaatttg 52375000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 9023894 - 9024000
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttg 278  Q
    |||||| | ||||||||||| |||||||| |||||||  ||||| ||| | |||||||||||||||||||| ||||||||||| |||||||| |||||      
T  9023894 taacaatacacattttaacatacactttttaacacacgttttttgattgggtaaaattcacatgagtcccaacaaatcatgtgagtcccatataaattga 9023993  T
Q  279 gtgggtc 285  Q
    |||||||    
T  9023994 gtgggtc 9024000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 287
Target Start/End: Original strand, 31758690 - 31758779
Alignment:
Q  198 acacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtctc 287  Q
    ||||||||||||||||| ||| ||| ||| |||||||||||||| ||  ||||||||||||||||||| |||  ||||||||||||||||    
T  31758690 acacacttttcaacacattctatttgattggttaaaattcacataagctccaccaaatcatgtgggtctcatgtaaatttggtgggtctc 31758779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 21433861 - 21433933
Alignment:
Q  183 aacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    |||| ||||||||||||||| ||||||||||||||| ||| ||| ||||||||||||||||| ||||||||||    
T  21433861 aacacacattttaacacacatttttcaacacactctctttgattggttaaaattcacatgagacccaccaaat 21433933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 993219 - 993291
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccat 269  Q
    ||||||||  ||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||||    
T  993219 aacacacatctttcaacacactctttg--attggttaaaattcacatgagtcccaccaaatcatgtgggtcccat 993291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 270
Target Start/End: Original strand, 3688570 - 3688645
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccata 270  Q
    |||||||| ||||||||||| | | ||| ||||||||||||||||||| ||| |||||||||||||||||||||||    
T  3688570 aacacacatttttcaacacattttctttgattagttaaaattcacatgggtctcaccaaatcatgtgggtcccata 3688645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 285
Target Start/End: Original strand, 51577997 - 51578094
Alignment:
Q  188 acattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtc 285  Q
    ||||| ||||| | |||| |||||||| || |||| ||| ||||||||||||||| |||||||||| || ||| |||| |||||||||||||||||||    
T  51577997 acattctaacatatacttatcaacacattcattttgatttgttaaaattcacatgggtcccaccaattcgtgtcggtctcatacaaatttggtgggtc 51578094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 278
Target Start/End: Complemental strand, 2247732 - 2247635
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttg 278  Q
    |||||||| ||||||||||||||  ||| |||| |||||| ||| ||| ||||||||| |||||  ||||||||||||||||||||| |||| |||||||    
T  2247732 taacaacacacattttaacacac--tttccaacccactctctttgattggttaaaattaacatggatcccaccaaatcatgtgggtcgcatataaatttg 2247635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 264
Target Start/End: Original strand, 19382300 - 19382366
Alignment:
Q  198 acacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggt 264  Q
    ||||||||| ||||||||||| ||| ||| |||||||||||||||  ||||||||||||||||||||    
T  19382300 acacactttccaacacactctatttgattggttaaaattcacatggatcccaccaaatcatgtgggt 19382366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 285
Target Start/End: Complemental strand, 25592335 - 25592245
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtc 285  Q
    ||||||||||||| || ||||||| ||| ||| |||||||||||  |  ||||||||||||||||||||||| ||| |||||| |||||||    
T  25592335 aacacacactttttaatacactctctttcattggttaaaattcattttggtcccaccaaatcatgtgggtcctatataaattttgtgggtc 25592245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 17181329 - 17181268
Alignment:
Q  224 attagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtc 285  Q
    ||||||||||||||||||  |||||||||||||| ||||||| |||| ||||||||||||||    
T  17181329 attagttaaaattcacataggtcccaccaaatcacgtgggtctcatataaatttggtgggtc 17181268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 7403227 - 7403168
Alignment:
Q  190 attttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtccca 249  Q
    ||||||||||||||| ||||||||||||| ||| ||| |||||||||||||||| |||||    
T  7403227 attttaacacacactattcaacacactctctttgattggttaaaattcacatgattccca 7403168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 41840580 - 41840653
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||||||||||||||||| | ||||||||||||||| ||| |||  |||||||| ||||| || |||||||||    
T  41840580 caacatacattttaacacatatttttcaacacactctctttgattgattaaaatttacatgggttccaccaaat 41840653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 15134722 - 15134646
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    |||||||| |||||||||| |||||||||||||||||| | | | ||| ||||||||||||||| | | ||||||||    
T  15134722 taacaacacacattttaacgcacacttttcaacacactgtctgtgattggttaaaattcacatgggactcaccaaat 15134646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 32286218 - 32286299
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgg 262  Q
    |||||||| | ||||||| | ||| ||||||||||  |||| || |||  ||||||||||||||||||||||||||||||||||    
T  32286218 taacaacaaatattttaagatacatttttcaacac--tcttattgattctttaaaattcacatgagtcccaccaaatcatgtgg 32286299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 287
Target Start/End: Original strand, 38036246 - 38036327
Alignment:
Q  204 ttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtctc 287  Q
    ||||||||||| | | ||| ||| ||||||||||||||||||||  |||||| |||||||| ||||| ||||||| ||||||||    
T  38036246 ttttcaacacattttctttgattggttaaaattcacatgagtcc--ccaaattatgtgggttccatataaatttgttgggtctc 38036327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 190 - 266
Target Start/End: Complemental strand, 42516589 - 42516513
Alignment:
Q  190 attttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcc 266  Q
    ||||||||||||||||||||||||| ||| |||  || ||| |||||||||| |||| ||| ||| |||||||||||    
T  42516589 attttaacacacacttttcaacacattctctttatttggtttaaattcacataagtcacactaaaccatgtgggtcc 42516513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 16577238 - 16577313
Alignment:
Q  180 aacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||||| ||||| ||||||||| ||||||||||| ||| ||| ||| ||||||||| ||||  ||||||||||||    
T  16577238 aacaacacacattctaacacacatttttcaacacattctgtttgatttgttaaaatttacataggtcccaccaaat 16577313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 32286361 - 32286310
Alignment:
Q  204 ttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||||||||||||||||||||| |||||||||||||||  ||| |||||||    
T  32286361 ttttcaacacactcttttttattggttaaaattcacatggatccaaccaaat 32286310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 2247575 - 2247625
Alignment:
Q  190 attttaacacacacttttcaacacactcttttttattagttaaaattcaca 240  Q
    ||||||||||||||||||||||||||||| ||| |||  ||||||||||||    
T  2247575 attttaacacacacttttcaacacactctctttaattgattaaaattcaca 2247625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 17508752 - 17508806
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaatt 236  Q
    |||||| |||||||||||||| ||||||||||||||||||| |||  ||||||||    
T  17508752 caacatgcattttaacacacatttttcaacacactctttttgatttattaaaatt 17508806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 53127995 - 53128051
Alignment:
Q  228 gttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggt 284  Q
    ||||||| ||||||| ||||||||| |||| |||||||| ||| |||||||||||||    
T  53127995 gttaaaactcacatgggtcccaccatatcaagtgggtcctatataaatttggtgggt 53128051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 3688726 - 3688663
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatg 242  Q
    |||||||| ||||||||| | ||||||| ||||||||| | ||| ||| |||||||||||||||    
T  3688726 taacaacacacattttaatatacactttccaacacactttctttgattggttaaaattcacatg 3688663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 284
Target Start/End: Original strand, 24976234 - 24976320
Alignment:
Q  198 acacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggt 284  Q
    ||||| ||||||||| ||||||||| |||  | |||||||||||   ||  | ||||||||||||||||||||  ||||||||||||    
T  24976234 acacatttttcaacaaactctttttgattgttaaaaattcacatagatctaaacaaatcatgtgggtcccatatgaatttggtgggt 24976320  T

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Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 154
Target Start/End: Complemental strand, 27926972 - 27926882
Alignment:
Q  64 cgatgcactatttggttgtggaaagagaagttagtaattccagctttactccaaacgtgcgttaagcccttcctaccactaaaccaaacat 154  Q
    |||||||||| |||| ||||||| |||||| ||| ||||| |||||   || | || || ||||||||||||| || ||||||||||||||    
T  27926972 cgatgcactaattggctgtggaatgagaagctaggaattctagcttctttcgagacatgggttaagcccttcccacgactaaaccaaacat 27926882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 34119639 - 34119689
Alignment:
Q  194 taacacacacttttcaacacactcttttttattagttaaaattcacatgag 244  Q
    ||||||||| |||||||||||||| |||| ||  |||||||||||||||||    
T  34119639 taacacacatttttcaacacactcgttttgatcggttaaaattcacatgag 34119689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 52375056 - 52375010
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacat 241  Q
    |||||||| ||||||| ||||||||||| ||| ||||||||||||||    
T  52375056 aacacacatttttcaatacactctttttgattggttaaaattcacat 52375010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 278
Target Start/End: Original strand, 1338428 - 1338514
Alignment:
Q  190 attttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttg 278  Q
    ||||||||||||| ||||||  ||||||| ||| ||| ||||||| |||||||  |||||||||||  | |||| |||||| |||||||    
T  1338428 attttaacacacatttttca--acactctctttgattggttaaaaatcacatggatcccaccaaattgtatgggacccatataaatttg 1338514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 41840720 - 41840671
Alignment:
Q  206 ttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||||||||||| ||| ||| |||||||||||||||||| |||| ||||    
T  41840720 ttcaacacactctatttgattggttaaaattcacatgagttccactaaat 41840671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 277
Target Start/End: Original strand, 48791229 - 48791314
Alignment:
Q  192 tttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaattt 277  Q
    ||||||||||||||| ||||||||||| ||| ||  ||| ||||||| |||   |||||||||  |||| ||||||||| ||||||    
T  48791229 tttaacacacactttccaacacactctctttaatcggttgaaattcatatggaacccaccaaactatgtcggtcccatataaattt 48791314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 993349 - 993289
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatg 242  Q
    ||||| |||| |||||||||||||| ||||| ||||| ||| ||| |||| ||||||||||    
T  993349 caacacacatcttaacacacactttccaacaaactctctttgatttgttagaattcacatg 993289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 16458071 - 16458035
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactct 218  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  16458071 caacacacattctaacacacacttttcaacacactct 16458035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 34252005 - 34252080
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    |||||||| | ||||||||| ||||||||||| || ||| |||| ||| ||||||||| |||  |||||||||||||    
T  34252005 taacaacacatattttaacatacacttttcaaaacgctc-ttttaattggttaaaattaacacaagtcccaccaaat 34252080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 38338609 - 38338561
Alignment:
Q  230 taaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttg 278  Q
    ||||||||||| || |  ||||||||||| |||||||||||||||||||    
T  38338609 taaaattcacacgaattacaccaaatcatttgggtcccatacaaatttg 38338561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 179 - 287
Target Start/End: Complemental strand, 47497855 - 47497747
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttg 278  Q
    |||||||| ||||| ||||||||| ||||||| | | | | ||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47497855 taacaacacacattctaacacacatttttcaatatattttctttgattggttaaaattcacatgagtcccaccaaattatgtgggtcccatacaaatttg 47497756  T
Q  279 gtgggtctc 287  Q
    |||||||||    
T  47497755 gtgggtctc 47497747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 182 - 285
Target Start/End: Complemental strand, 12275890 - 12275787
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtg 281  Q
    ||||| ||||| ||||||||||||| ||||||||||| ||  ||| ||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||    
T  12275890 caacacacattctaacacacactttccaacacactctcttcgattggttaaaattcatatgggtcccaccaaatcatgtgggtcccatataaatttggtg 12275791  T
Q  282 ggtc 285  Q
    ||||    
T  12275790 ggtc 12275787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 179 - 284
Target Start/End: Complemental strand, 10056778 - 10056673
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttg 278  Q
    |||||||| ||||| |||||| |||||||||||||||||| ||| |||||||||||| || ||| ||||| ||||||||||||||||||||| ||| |||    
T  10056778 taacaacacacattctaacacgcacttttcaacacactctctttaattagttaaaatccatatgggtccctccaaatcatgtgggtcccatataaaattg 10056679  T
Q  279 gtgggt 284  Q
    ||||||    
T  10056678 gtgggt 10056673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 195 - 288
Target Start/End: Original strand, 11201293 - 11201386
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtctct 288  Q
    |||||||||||| ||||||||||| ||| ||||||||||||||||||| |||||||||||||| ||||||| |||| ||||||| |||||||||    
T  11201293 aacacacactttccaacacactctctttcattagttaaaattcacatgggtcccaccaaatcacgtgggtctcatataaatttgatgggtctct 11201386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 182 - 281
Target Start/End: Complemental strand, 26863065 - 26862966
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtg 281  Q
    ||||| ||||||||| |||||||||||| || ||||| ||| ||| ||||||||||||||| ||||||||||||||||||||||| ||| |||| |||||    
T  26863065 caacacacattttaatacacacttttcatcaaactctctttaattggttaaaattcacatgggtcccaccaaatcatgtgggtcctatataaatatggtg 26862966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 188 - 285
Target Start/End: Complemental strand, 40134530 - 40134435
Alignment:
Q  188 acattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtc 285  Q
    ||||||||||||||||||| ||||||||||| |   ||| ||||||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||    
T  40134530 acattttaacacacactttccaacacactctctg--attggttaaaattcacatgggtcccaccaaattatgtgggtcccatataaatttggtaggtc 40134435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 280
Target Start/End: Complemental strand, 49107057 - 49106960
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggt 280  Q
    ||||||||||| ||||||||||||||||||||||||| ||| ||| ||||||||||||||  |||||||||||||||| |||  ||||| |||||||||    
T  49107057 caacatacattctaacacacacttttcaacacactctctttgattggttaaaattcacataggtcccaccaaatcatgcggg-accatataaatttggt 49106960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 282
Target Start/End: Complemental strand, 316504 - 316411
Alignment:
Q  189 cattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgg 282  Q
    |||||||||||||| ||||||||||| ||| ||| ||| | ||||||  |||||||| |||| |||||| ||||||| ||||||||||||||||    
T  316504 cattttaacacacatttttcaacacattctctttgattggataaaatctacatgagttccactaaatcaagtgggtctcatacaaatttggtgg 316411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 283
Target Start/End: Complemental strand, 2276413 - 2276328
Alignment:
Q  198 acacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtggg 283  Q
    |||||| ||| |||||||| | ||| ||| |||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||    
T  2276413 acacacattttaacacactatctttaattggttaaaattcacatgaatcccaccaaattatgtgggtcccttataaatttggtggg 2276328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 280
Target Start/End: Complemental strand, 7017225 - 7017140
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggt 280  Q
    |||||||| ||||||| ||||||| ||| ||| |||||||||||||| ||||| ||||||| |||||| ||||||| |||||||||    
T  7017225 aacacacatttttcaatacactctctttgattggttaaaattcacataagtcctaccaaattatgtggatcccatataaatttggt 7017140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 280
Target Start/End: Complemental strand, 7032583 - 7032498
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggt 280  Q
    |||||||| ||||||| ||||||| ||| ||| |||||||||||||| ||||| ||||||| |||||| ||||||| |||||||||    
T  7032583 aacacacatttttcaatacactctctttgattggttaaaattcacataagtcctaccaaattatgtggatcccatataaatttggt 7032498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 3235543 - 3235619
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    |||||||| ||||||||||||||||||| ||| ||||||| ||| ||| ||||||||||||||||| |||| |||||    
T  3235543 taacaacacacattttaacacacactttccaatacactctctttgattggttaaaattcacatgagacccatcaaat 3235619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 198 - 277
Target Start/End: Complemental strand, 46074191 - 46074112
Alignment:
Q  198 acacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaattt 277  Q
    |||||| ||| |||||||||| ||| ||| |||||||||||||||||||||| ||||||| |||| ||||||| ||||||    
T  46074191 acacacattttaacacactctctttaattggttaaaattcacatgagtcccatcaaatcacgtggatcccatataaattt 46074112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 2276276 - 2276337
Alignment:
Q  194 taacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||||||||||||||||||||||| ||| ||| |||||||||||||||  |||||||||||    
T  2276276 taacacacacttttcaacacactctctttgattggttaaaattcacatggatcccaccaaat 2276337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 3235695 - 3235606
Alignment:
Q  198 acacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtctc 287  Q
    |||||| || ||||||||||||||| ||| ||||||||||||||| |||| ||| ||  |||||||||||||  ||||||| ||||||||    
T  3235695 acacacattccaacacactctttttgattggttaaaattcacatgggtccgacccaaatatgtgggtcccatgtaaatttgatgggtctc 3235606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 198 - 283
Target Start/End: Complemental strand, 18089838 - 18089753
Alignment:
Q  198 acacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtggg 283  Q
    |||||||||| |||||||||| |||  || ||||||||||||||| |||| ||||||| ||||||  |||||| ||||||||||||    
T  18089838 acacactttttaacacactctctttggttggttaaaattcacatgggtccaaccaaattatgtggaacccatataaatttggtggg 18089753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 182 - 270
Target Start/End: Complemental strand, 26647842 - 26647754
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccata 270  Q
    ||||||||||| ||| ||||||||||||||||||| ||||| ||| |||| ||||||||| ||| | | ||||| | ||||||| ||||    
T  26647842 caacatacattctaatacacacttttcaacacactatttttgattggttagaattcacataagttctatcaaattacgtgggtctcata 26647754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 285
Target Start/End: Complemental strand, 5443681 - 5443579
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtg 281  Q
    ||||| ||||| ||||||||| ||||||||| ||| | ||| ||| |||||||||||||| ||  ||||||||| |||||| ||||||| || ||| |||    
T  5443681 caacacacattctaacacacatttttcaacatactttctttgattggttaaaattcacat-agctccaccaaattatgtggatcccatataacttttgtg 5443583  T
Q  282 ggtc 285  Q
    ||||    
T  5443582 ggtc 5443579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 24516549 - 24516623
Alignment:
Q  188 acattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgg 262  Q
    |||| |||| |||| |||| ||||| ||| | ||| ||| ||||||||||||||| |||||||||||||||||||    
T  24516549 acatattaatacactctttccaacatactttctttgattggttaaaattcacatgggtcccaccaaatcatgtgg 24516623  T

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Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 283
Target Start/End: Original strand, 31042134 - 31042228
Alignment:
Q  190 attttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccac-caaatcatgtgggtcccatacaaatttggtggg 283  Q
    ||||||||||||||||||||| ||| | | ||| ||| ||||||||||||| |||| ||||  |||||| ||| | |||||| ||||||||||||    
T  31042134 attttaacacacacttttcaatacattatctttgattggttaaaattcacacgagttccactaaaatcaagtgagacccatataaatttggtggg 31042228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 282
Target Start/End: Complemental strand, 25644550 - 25644452
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtg 281  Q
    |||||||  ||||||| ||||||||| ||| |||||| ||| |||  ||||||||||  ||| ||||||||||| || ||||| ||||| ||||||||||    
T  25644550 caacatatgttttaacccacactttttaactcactctctttgattgattaaaattca--tgaatcccaccaaattatatgggttccatataaatttggtg 25644453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 10056622 - 10056670
Alignment:
Q  194 taacacacacttttcaacacactcttttttattagttaaaattcacatg 242  Q
    ||||||| ||||||||||||||||||||| ||| || ||||||||||||    
T  10056622 taacacatacttttcaacacactctttttgattggtcaaaattcacatg 10056670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 285
Target Start/End: Complemental strand, 5452726 - 5452624
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtg 281  Q
    ||||| ||||| ||||||||| ||||||||| ||| | ||| ||| |||||||||||||| ||  ||||| ||| |||||| ||||||| || ||| |||    
T  5452726 caacacacattctaacacacatttttcaacatactttctttgattggttaaaattcacat-agctccacccaattatgtggatcccatataacttttgtg 5452628  T
Q  282 ggtc 285  Q
    ||||    
T  5452627 ggtc 5452624  T

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Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 40803294 - 40803235
Alignment:
Q  183 aacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatg 242  Q
    |||| ||||| ||||| |||||||| || ||||| ||||||||| |||||||||||||||    
T  40803294 aacacacattctaacatacactttttaaaacactattttttattggttaaaattcacatg 40803235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 283
Target Start/End: Complemental strand, 7526243 - 7526169
Alignment:
Q  209 aacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtggg 283  Q
    |||||| | ||||| ||| ||||||||| ||||| ||| ||||||||||||  |||| |||| ||||||||||||    
T  7526243 aacacattttttttgattggttaaaatttacatgtgtctcaccaaatcatgctggtctcatataaatttggtggg 7526169  T

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Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 26647690 - 26647740
Alignment:
Q  194 taacacacacttttcaacacactcttttttattagttaaaattcacatgag 244  Q
    ||||||||| ||||||||| | ||||||| ||| |||||||||||||||||    
T  26647690 taacacacatttttcaacatagtctttttcattggttaaaattcacatgag 26647740  T

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Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 36129071 - 36129129
Alignment:
Q  198 acacacttttcaacacactctttttt-attagttaaaattcacatgagtcccaccaaat 255  Q
    |||||| ||| |||||||  |||||| ||| ||||||||||||||||||||||||||||    
T  36129071 acacacattttaacacacatttttttgattggttaaaattcacatgagtcccaccaaat 36129129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 36992857 - 36992915
Alignment:
Q  229 ttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtctc 287  Q
    ||||||||||||||| || |||||||||||||  ||||||||  | |||||||||||||    
T  36992857 ttaaaattcacatgaatctcaccaaatcatgtaagtcccatatgattttggtgggtctc 36992915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 260
Target Start/End: Original strand, 16357139 - 16357208
Alignment:
Q  191 ttttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgt 260  Q
    ||||||||||  |||||||||||||  ||||| ||| ||| ||||||| ||||||| ||| |||||||||    
T  16357139 ttttaacacaatcttttcaacacacattttttaattggttgaaattcaaatgagtcacactaaatcatgt 16357208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 5443517 - 5443549
Alignment:
Q  182 caacatacattttaacacacacttttcaacaca 214  Q
    ||||||||||| |||||||||||||||||||||    
T  5443517 caacatacattctaacacacacttttcaacaca 5443549  T

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Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 5452562 - 5452594
Alignment:
Q  182 caacatacattttaacacacacttttcaacaca 214  Q
    ||||||||||| |||||||||||||||||||||    
T  5452562 caacatacattctaacacacacttttcaacaca 5452594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 29356932 - 29356992
Alignment:
Q  210 acacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccata 270  Q
    ||||||||| ||| ||| ||||||||||||||| || ||||||| ||| |||| |||||||    
T  29356932 acacactctctttgattggttaaaattcacatgggttccaccaattcacgtggatcccata 29356992  T

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Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 187 - 284
Target Start/End: Complemental strand, 31970267 - 31970170
Alignment:
Q  187 tacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggt 284  Q
    |||| |||||||||| |||||||||||||||||||| |||  ||||| |||| ||| ||||||||||||||||||||||||||| |||||||||||||    
T  31970267 tacaatttaacacacgcttttcaacacactctttttaattgattaaatttcatatgggtcccaccaaatcatgtgggtcccatataaatttggtgggt 31970170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 195 - 281
Target Start/End: Complemental strand, 731468 - 731383
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtg 281  Q
    |||||||| ||||||||| | ||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||    
T  731468 aacacaca-ttttcaacaaagtcttttttattggttaaaatttacatgagtcgcaccaaatcatgtgggtcccatataaatttggtg 731383  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 183 - 285
Target Start/End: Original strand, 38663639 - 38663741
Alignment:
Q  183 aacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgg 282  Q
    |||| ||||||||||||| | ||||||||||||||| ||| ||| |||| |||||||||  ||||||||||||||| ||||||| ||| |||||||||||    
T  38663639 aacacacattttaacacatatttttcaacacactctctttgattggttacaattcacataggtcccaccaaatcatatgggtcctatataaatttggtgg 38663738  T
Q  283 gtc 285  Q
    |||    
T  38663739 gtc 38663741  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 34437749 - 34437663
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtccca 268  Q
    ||||| |||||||||||| |||||||||||||||||| ||| ||| ||||||||||||||| ||||| |||||| || |||||||||    
T  34437749 caacacacattttaacacgcacttttcaacacactctctttgattggttaaaattcacatgggtccccccaaattatatgggtccca 34437663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 270
Target Start/End: Original strand, 34437598 - 34437673
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccata 270  Q
    |||||||| ||||||||| ||||| ||| ||| ||||||||||||||| |||||||||||||||||||| ||||||    
T  34437598 aacacacatttttcaacaaactctctttgattggttaaaattcacatgggtcccaccaaatcatgtgggacccata 34437673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 284
Target Start/End: Original strand, 38948080 - 38948181
Alignment:
Q  183 aacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgg 282  Q
    ||||| |||||||||||||||||||||| ||| |||||||||||| |||||||| | | ||||| |||||||| || ||||||| ||| || |||| |||    
T  38948080 aacatgcattttaacacacacttttcaatacattcttttttattaattaaaatttatacgagtctcaccaaattatatgggtccgatataattttgatgg 38948179  T
Q  283 gt 284  Q
    ||    
T  38948180 gt 38948181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 285
Target Start/End: Original strand, 7444268 - 7444371
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagt-cccaccaaatcatgtgggtcccatacaaatttggt 280  Q
    ||||| ||||||||||||||| ||||||||||| | | ||| ||  ||||||||||| | |||| ||||||||||||||||||||||||| |||||||||    
T  7444268 caacacacattttaacacacatttttcaacacattttctttaatcggttaaaattcaaa-gagttcccaccaaatcatgtgggtcccatataaatttggt 7444366  T
Q  281 gggtc 285  Q
     ||||    
T  7444367 aggtc 7444371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 23317923 - 23318001
Alignment:
Q  209 aacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtctc 287  Q
    |||||||||  ||| ||| ||||||||||||||  ||||||||||||||||||||||||||| |||||| |||| ||||    
T  23317923 aacacactccctttaatttgttaaaattcacataggtcccaccaaatcatgtgggtcccatataaatttagtggatctc 23318001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 2542697 - 2542762
Alignment:
Q  190 attttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||||||||||| ||||||||||||||| ||| ||| ||||||||| ||||||| ||||||||||    
T  2542697 attttaacacacatttttcaacacactctctttgattggttaaaatttacatgaggcccaccaaat 2542762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 194 - 287
Target Start/End: Original strand, 49403471 - 49403564
Alignment:
Q  194 taacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtctc 287  Q
    ||||||||| |||| |||| | | ||| | ||| |||||||||||||| ||||||| ||||| |||||||| ||||| ||||||||||||||||    
T  49403471 taacacacattttttaacatattttttatgattggttaaaattcacataagtcccatcaaattatgtgggttccatataaatttggtgggtctc 49403564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 40374172 - 40374093
Alignment:
Q  198 acacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttg 278  Q
    ||||| ||||||| || |||| ||| ||| ||||||||||||||| | ||||||||||||||||||||||||| |||||||    
T  40374172 acacatttttcaatacgctctatttgattggttaaaattcacatg-gccccaccaaatcatgtgggtcccatataaatttg 40374093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 2542828 - 2542753
Alignment:
Q  208 caacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtggg 283  Q
    ||||||| ||| ||| ||| |||||||||||||||  | |||||||||||||||||| ||||| ||||||||||||    
T  2542828 caacacattctctttgattggttaaaattcacatggcttccaccaaatcatgtgggttccatataaatttggtggg 2542753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 21281472 - 21281539
Alignment:
Q  190 attttaacacacacttttcaacacactctttttt-attagttaaaattcacatgagtcccaccaaatc 256  Q
    ||||||||| ||||||||||||||| |||||||| ||| ||||||||||||||  |||||||||||||    
T  21281472 attttaacatacacttttcaacacattcttttttgattggttaaaattcacataggtcccaccaaatc 21281539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 49403602 - 49403551
Alignment:
Q  204 ttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||||||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  49403602 ttttcaacacacttttttttatttgttaaaattcacatgagacccaccaaat 49403551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 287
Target Start/End: Original strand, 5695673 - 5695767
Alignment:
Q  190 attttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtctc 287  Q
    ||||||||||||||||||||||||| | |||||||||  |||||||||| |||||  | ||||||||||| || ||||||| ||||||| ||||||||    
T  5695673 attttaacacacacttttcaacaca-ttttttttattgtttaaaattcatatgag-actaccaaatcatg-ggatcccatataaatttgatgggtctc 5695767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 282
Target Start/End: Original strand, 40668932 - 40669016
Alignment:
Q  198 acacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgg 282  Q
    |||||| ||| |||||||||| ||| ||| ||||||| ||||||| ||| ||| |||| ||||||| |||||| |||||||||||    
T  40668932 acacacattttaacacactctctttgattggttaaaactcacatgggtctcacaaaattatgtgggacccatataaatttggtgg 40669016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 51810842 - 51810766
Alignment:
Q  188 acattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtccc 267  Q
    ||||||||||| ||| ||| ||||||||||||||  ||||||||||||||||||| |||||||| |||||| ||| ||||    
T  51810842 acattttaacatacattttccaacacactctttt--attagttaaaattcacatg-gtcccacccaatcatatggctccc 51810766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 16257670 - 16257603
Alignment:
Q  188 acattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||||||||||||| ||||||||||| | ||||| ||  ||||||||| ||||| ||||||||||||    
T  16257670 acattttaacacacatttttcaacacattatttttgatatgttaaaattgacatgtgtcccaccaaat 16257603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 31970119 - 31970166
Alignment:
Q  194 taacacacacttttcaacacactcttttttattagttaaaattcacat 241  Q
    ||||||||| ||||||||||||||||||| ||| ||||||||||||||    
T  31970119 taacacacatttttcaacacactctttttgattggttaaaattcacat 31970166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 40154312 - 40154365
Alignment:
Q  99 aattccagctttactccaaacgtgcgttaagcccttcctaccactaaaccaaaca 153  Q
    ||||||||||| ||||||| |||| ||||||||||||| ||||||||||||||||    
T  40154312 aattccagcttcactccaa-cgtgtgttaagcccttcccaccactaaaccaaaca 40154365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 40669079 - 40669008
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||| ||||||||||||||  ||||||||||||||| ||| ||| ||||||||||||| | || |||||||||    
T  40669079 caacacacattttaacacac--ttttcaacacactctctttgattggttaaaattcacacgggttccaccaaat 40669008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 45925238 - 45925164
Alignment:
Q  204 ttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttg 278  Q
    ||||||||||| | | ||| |||  |||||||||| ||||||| |||||||| |||||||||||||| |||||||    
T  45925238 ttttcaacacattttctttgattgattaaaattcatatgagtctcaccaaattatgtgggtcccatataaatttg 45925164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 281
Target Start/End: Original strand, 939316 - 939420
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacac--tcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatt 276  Q
    |||||||||||||| ||| |||||  ||||||||||   ||| ||| ||| |||||||||||||| | || || ||||| |||||| ||||||| |||||    
T  939316 taacaacatacattctaatacacatatttcaacacatattctctttgattggttaaaattcacataaatctcatcaaattatgtggatcccatataaatt 939415  T
Q  277 tggtg 281  Q
    |||||    
T  939416 tggtg 939420  T

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Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 7444433 - 7444360
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||| ||||| ||||| ||||||||||||||| ||| ||| || |||||||||||||||| | || |||||||    
T  7444433 caacacacattctaacaaacacttttcaacacattctctttgatgagttaaaattcacatgggacctaccaaat 7444360  T

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Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 255
Target Start/End: Complemental strand, 49822668 - 49822607
Alignment:
Q  194 taacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||||||| ||||||||||||||| ||| ||| |||||||||||||||  ||||| |||||    
T  49822668 taacacacatttttcaacacactctctttgattggttaaaattcacatggatcccatcaaat 49822607  T

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Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 282
Target Start/End: Complemental strand, 31839472 - 31839404
Alignment:
Q  214 actcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgg 282  Q
    |||||||||||||| ||||| || ||||| ||||||||||||||| |||||| | || |||||| ||||    
T  31839472 actcttttttattaattaaactttacatgcgtcccaccaaatcatatgggtctcgtataaatttagtgg 31839404  T

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Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 38663790 - 38663730
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||| || ||||||||| ||||||||| ||| ||||||||||||||| | ||||||||||    
T  38663790 aacacgcatttttcaacatactctttttaattggttaaaattcacatgggacccaccaaat 38663730  T

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Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 45215466 - 45215406
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    |||||||||||||| ||||| ||||||| |||  |||||||||| |||||| |||||||||    
T  45215466 aacacacacttttcgacacattctttttgattgattaaaattcatatgagttccaccaaat 45215406  T

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Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 283
Target Start/End: Original strand, 18075217 - 18075252
Alignment:
Q  248 caccaaatcatgtgggtcccatacaaatttggtggg 283  Q
    ||||||||||||||||||||||| ||||||||||||    
T  18075217 caccaaatcatgtgggtcccatataaatttggtggg 18075252  T

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Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 283
Target Start/End: Complemental strand, 31851989 - 31851911
Alignment:
Q  204 ttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtggg 283  Q
    ||||||||||||||| ||| ||| ||||||||||||||  |||| |  |||| ||||||| |||||| ||||||||||||    
T  31851989 ttttcaacacactctctttgatttgttaaaattcacat-cgtcctattaaattatgtgggacccatataaatttggtggg 31851911  T

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Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 282
Target Start/End: Original strand, 45215332 - 45215414
Alignment:
Q  199 cacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgg 282  Q
    |||||||||||||||| | | ||  ||| |||||||| |||||||||||||||||||||||| ||  || || |||||||||||    
T  45215332 cacacttttcaacacattttcttagattggttaaaat-cacatgagtcccaccaaatcatgtaggatccgtataaatttggtgg 45215414  T

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Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 287
Target Start/End: Original strand, 45563063 - 45563158
Alignment:
Q  192 tttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtctc 287  Q
    ||||||| ||| |||  |||||||| | ||| ||| |||||||| ||||||  |||||||||||||||| | || |||| ||||||||||| ||||    
T  45563063 tttaacatacattttctaacacactatctttgattggttaaaatgcacatggctcccaccaaatcatgttgatctcatataaatttggtggatctc 45563158  T

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Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 15366488 - 15366542
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaatt 236  Q
    ||||| ||||| ||| ||||||||| ||||||||||||||| ||| |||||||||    
T  15366488 caacacacattctaagacacactttccaacacactctttttgattggttaaaatt 15366542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 277
Target Start/End: Complemental strand, 34783494 - 34783404
Alignment:
Q  187 tacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaattt 277  Q
    |||||| || ||||||||| |||||||||| | ||| ||| ||||||||||| |||  |||| ||||||||| |  |||||||| ||||||    
T  34783494 tacattctagcacacacttctcaacacactatctttgattggttaaaattcatatggctcccgccaaatcattttagtcccatataaattt 34783404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 644946 - 644881
Alignment:
Q  212 acactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaattt 277  Q
    ||||||||||| |||| |||||||| |||| |||| || ||||| |||||||||| ||| ||||||    
T  644946 acactctttttgattaattaaaatttacattagtcgcatcaaattatgtgggtccgatataaattt 644881  T

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Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 16661807 - 16661863
Alignment:
Q  187 tacattttaacacacacttttcaacacactcttttttattagttaaaattcacatga 243  Q
    |||||| ||||||||| ||||||||||| ||| ||| ||  ||||||||||||||||    
T  16661807 tacattctaacacacatttttcaacacattctctttgatcggttaaaattcacatga 16661863  T

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Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 283
Target Start/End: Original strand, 33422683 - 33422719
Alignment:
Q  247 ccaccaaatcatgtgggtcccatacaaatttggtggg 283  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  33422683 ccaccaaattatgtgggttccatacaaatttggtggg 33422719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 35752181 - 35752133
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatga 243  Q
    |||||||  ||||||||||||| ||||||||| ||||||||||| ||||    
T  35752181 aacacactgttttcaacacactattttttattggttaaaattcagatga 35752133  T

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Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 3907792 - 3907703
Alignment:
Q  198 acacactttt--caacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtc 285  Q
    ||||||||||  ||||||| ||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  3907792 acacactttttccaacacattctttttgattggttaaaattcacatgggtcccaccaaatcatgtgggtcccatataaatttggtgggtc 3907703  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 25545354 - 25545265
Alignment:
Q  198 acacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtctc 287  Q
    |||||| ||| |||||||||| ||| ||| |||||||||||| |||||||||||||||||||| ||||||||| |||||| |||||||||    
T  25545354 acacacattttaacacactctctttgattggttaaaattcacgtgagtcccaccaaatcatgtcggtcccatataaatttagtgggtctc 25545265  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 282
Target Start/End: Complemental strand, 27195402 - 27195304
Alignment:
Q  183 aacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgg 282  Q
    |||| ||||||||||||||||||| |||  |||||| ||| |||  |||||||||||||||||||||| ||||||||| || |||||| |||||||||||    
T  27195402 aacacacattttaacacacacttt-caatgcactctctttgattgattaaaattcacatgagtcccacaaaatcatgtcggacccatataaatttggtgg 27195304  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 287
Target Start/End: Complemental strand, 36059359 - 36059254
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtg 281  Q
    ||||| ||||| ||||||| ||||| ||||||||| | ||| ||| ||||||||| |||||  ||||| ||||||||||||||| |||| ||||||| ||    
T  36059359 caacacacattctaacacatactttccaacacactttatttgattggttaaaatttacatggatcccatcaaatcatgtgggtctcatataaatttgatg 36059260  T
Q  282 ggtctc 287  Q
    ||||||    
T  36059259 ggtctc 36059254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 17474928 - 17474865
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatg 242  Q
    ||||||||||||||||||||||||||||||||||||| || ||| |||  ||||||||||||||    
T  17474928 taacaacatacattttaacacacacttttcaacacacactctttgattgattaaaattcacatg 17474865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 270
Target Start/End: Complemental strand, 32309752 - 32309661
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccata 270  Q
    |||||| ||||||  |||||||||||||||||| || ||| ||| ||| ||||||||| |||| | ||||||||||||||||| ||||||||    
T  32309752 taacaatatacatcctaacacacacttttcaacgcattctctttgatttgttaaaatttacattaatcccaccaaatcatgtgagtcccata 32309661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 22399757 - 22399830
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||| ||||| ||| || |||||||||||||||||||||| ||| | ||||||||||||||| ||||||||||    
T  22399757 caacacacattctaatactcacttttcaacacactctttttgattggataaaattcacatgagacccaccaaat 22399830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 40773115 - 40773183
Alignment:
Q  187 tacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    |||||||||||||| | ||||||||||||| ||||||||| || ||||||||||||||  |||||||||    
T  40773115 tacattttaacacataattttcaacacactattttttattggtcaaaattcacatgagatccaccaaat 40773183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 287
Target Start/End: Original strand, 42420001 - 42420109
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttg 278  Q
    ||||||||  |||| ||||||||| ||||||||||| ||| ||| ||| |||||||   || || ||||||||||||||||||| ||||||| |||||||    
T  42420001 taacaacactcattctaacacacatttttcaacacattctctttaattggttaaaacatacgtgggtcccaccaaatcatgtggatcccatataaatttg 42420100  T
Q  279 gtgggtctc 287  Q
     ||| ||||    
T  42420101 atggatctc 42420109  T

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Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 287
Target Start/End: Complemental strand, 22399892 - 22399817
Alignment:
Q  212 acactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtctc 287  Q
    ||||||| ||| ||| |||||||||||||||||||| || ||||||| |||||| ||||  |||||||||||||||    
T  22399892 acactctctttgattggttaaaattcacatgagtcctactaaatcatctgggtctcatatgaatttggtgggtctc 22399817  T

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Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 284
Target Start/End: Original strand, 38029531 - 38029629
Alignment:
Q  183 aacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgg 282  Q
    |||| ||||| ||||||||| ||| |||||||||   ||| ||| ||||||||||||||| ||| ||||||||||||||| || |||| ||||| |||||    
T  38029531 aacacacattctaacacacattttccaacacact---tttgattggttaaaattcacatgggtctcaccaaatcatgtggatctcatataaattgggtgg 38029627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 33029489 - 33029554
Alignment:
Q  190 attttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||||||| | ||||||||||||| ||| ||| ||||||||||||||| || |||||||||||||    
T  33029489 attttaacatatacttttcaacacattctctttaattagttaaaattcatataagtcccaccaaat 33029554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 4190213 - 4190138
Alignment:
Q  182 caacatacattttaacacacacttttcaacacac--tcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||||||||| ||||||||||||||||||||||  ||| ||| ||  ||||||||||||||| | ||||||||||    
T  4190213 caacatacattctaacacacacttttcaacacacggtctctttgataggttaaaattcacatgggacccaccaaat 4190138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 25545213 - 25545278
Alignment:
Q  188 acattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||||||||||||| ||||||||||||||  ||| ||| ||||||||||||||||| ||||| ||||    
T  25545213 acattttaacacacatttttcaacacactc--tttgattggttaaaattcacatgagacccactaaat 25545278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 270
Target Start/End: Original strand, 13122043 - 13122114
Alignment:
Q  199 cacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccata 270  Q
    |||||||||||||| ||||| ||| ||| | ||||||||||||| ||||||||| || | ||||||||||||    
T  13122043 cacacttttcaacatactctctttgattgggtaaaattcacatgtgtcccaccatattacgtgggtcccata 13122114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 270
Target Start/End: Original strand, 43461961 - 43462036
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccata 270  Q
    |||||||| |||  |||||||||||||| ||  ||||||||||||| |||| ||||||||||| ||||||| ||||    
T  43461961 aacacacattttctaacacactctttttaatcggttaaaattcacacgagttccaccaaatcacgtgggtctcata 43462036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 255
Target Start/End: Original strand, 3907643 - 3907714
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||| ||||| ||||| ||||||||||||||||||  ||| ||| ||||||||||||||| | ||||||||||    
T  3907643 caacacacattctaacaaacacttttcaacacactc--tttgattggttaaaattcacatgggacccaccaaat 3907714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 41169534 - 41169469
Alignment:
Q  190 attttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||||||||||| ||||||||||||||| ||| ||  ||||||||||||||| |  |||||||||    
T  41169534 attttaacacacatttttcaacacactctctttgatccgttaaaattcacatgtgatccaccaaat 41169469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 41169405 - 41169477
Alignment:
Q  210 acacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgg 282  Q
    ||||||||| ||| ||| ||| |||||||||||  | ||||||||||||| | |||||||| |||||||||||    
T  41169405 acacactctatttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtgg 41169477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 9949183 - 9949116
Alignment:
Q  69 cactatttggttgtggaaagagaagttagtaattccagctttactccaaacgtgcgttaagcccttcc 136  Q
    |||||||| || |||||| |||||| ||| ||||||||||| |||||| ||||||||| | |||||||    
T  9949183 cactatttagtggtggaatgagaagctaggaattccagcttcactccagacgtgcgtttaacccttcc 9949116  T

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Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 287
Target Start/End: Complemental strand, 31273163 - 31273084
Alignment:
Q  208 caacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtctc 287  Q
    ||||||||||||||| ||| ||||||||| |||||  ||  |||||||||||||| | | ||| ||||||||||| ||||    
T  31273163 caacacactctttttgatttgttaaaatttacatggatcttaccaaatcatgtggattctatataaatttggtggatctc 31273084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 33029624 - 33029573
Alignment:
Q  204 ttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||||||||||||| ||| ||  ||||||| ||||||||||||||||||||    
T  33029624 ttttcaacacactctctttgatcggttaaaactcacatgagtcccaccaaat 33029573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 41106520 - 41106470
Alignment:
Q  220 ttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccata 270  Q
    ||||||| ||||||||||||||  ||| |||||||| ||||||||||||||    
T  41106520 ttttattggttaaaattcacatcggtcgcaccaaattatgtgggtcccata 41106470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 42420169 - 42420107
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgag 244  Q
    ||||| ||||| ||| |||| |||||||||||||||| ||| ||| ||||||| |||||||||    
T  42420169 caacacacattctaaaacacgcttttcaacacactctatttgattggttaaaactcacatgag 42420107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 282
Target Start/End: Original strand, 3416257 - 3416350
Alignment:
Q  190 attttaaca-cacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgg 282  Q
    ||||||||| ||||| |||||||||||| | ||| |||  |||||||| ||||| |||||||  |||||||||||||  ||| |||||| ||||    
T  3416257 attttaacaacacacatttcaacacactttctttgattgattaaaatttacatgtgtcccacagaatcatgtgggtcatatataaatttagtgg 3416350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 280
Target Start/End: Complemental strand, 4158218 - 4158133
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggt 280  Q
    |||||||| |||| || | ||||| ||| ||| ||||||||||||| || ||||| ||||| ||||||| | |||| |||||||||    
T  4158218 aacacacattttttaatatactctctttgattggttaaaattcacacgaatcccatcaaattatgtgggactcatataaatttggt 4158133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 285
Target Start/End: Original strand, 4190072 - 4190149
Alignment:
Q  208 caacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtc 285  Q
    ||||||||||| ||| ||| |||||||||||||||  ||||| ||||| | |||||||| ||   |||||||||||||    
T  4190072 caacacactctctttgattggttaaaattcacatggatcccaacaaattacgtgggtcctatgtgaatttggtgggtc 4190149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 28907360 - 28907416
Alignment:
Q  187 tacattttaacacacacttttcaacacactcttttttattagttaaaattcacatga 243  Q
    |||||| ||||||||| ||||||||||| ||| ||| ||  ||||||||||||||||    
T  28907360 tacattctaacacacatttttcaacacattctctttgatcggttaaaattcacatga 28907416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 28943755 - 28943811
Alignment:
Q  187 tacattttaacacacacttttcaacacactcttttttattagttaaaattcacatga 243  Q
    |||||| ||||||||| ||||||||||| ||| ||| ||  ||||||||||||||||    
T  28943755 tacattctaacacacatttttcaacacattctctttgatcggttaaaattcacatga 28943811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 40927611 - 40927647
Alignment:
Q  186 atacattttaacacacacttttcaacacactcttttt 222  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  40927611 atacattctaacacacacttttcaatacactcttttt 40927647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 42249397 - 42249457
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatg 242  Q
    ||||||| ||| ||||||| | ||||||||||||| ||||| ||| ||||||||| |||||    
T  42249397 caacataaattctaacacatatttttcaacacactatttttaattggttaaaatttacatg 42249457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 188 - 283
Target Start/End: Complemental strand, 136467 - 136372
Alignment:
Q  188 acattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtggg 283  Q
    ||||||||||||||| ||||||||||||||||||| ||| ||||||| ||||||| |||||| ||||||||||| | |||||| ||||||| ||||    
T  136467 acattttaacacacatttttcaacacactctttttgattggttaaaactcacatgtgtcccatcaaatcatgtgtgacccatataaatttgatggg 136372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 182 - 269
Target Start/End: Original strand, 1473602 - 1473689
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccat 269  Q
    ||||| ||||||||| ||||| ||||||||||||| | ||| ||| ||||||||||||||| || |||||||||||||||||||||||    
T  1473602 caacacacattttaatacacatttttcaacacactatctttgattggttaaaattcacatgggttccaccaaatcatgtgggtcccat 1473689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 182 - 281
Target Start/End: Original strand, 4483355 - 4483452
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtg 281  Q
    ||||||||||||||||| |||||||||||||| ||||||   ||| ||||||||| | | | |||||||||||||||||||| |||||| ||||||||||    
T  4483355 caacatacattttaacatacacttttcaacactctctttg--attggttaaaattaatacgggtcccaccaaatcatgtgggacccatataaatttggtg 4483452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 28865394 - 28865484
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccat 269  Q
    |||||||| | ||| ||||| |||||||  |||| ||| ||||||||| ||||||||||||||| |||||||||| |||||||||||||||    
T  28865394 taacaacacatattgtaacatacactttctaacatacttttttttattggttaaaattcacatgggtcccaccaattcatgtgggtcccat 28865484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 287
Target Start/End: Complemental strand, 12731694 - 12731601
Alignment:
Q  194 taacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtctc 287  Q
    ||||||||| ||| ||||||||||||||| ||| ||||||||| ||||   | |||||||||||||||||||||| | ||||||| ||||||||    
T  12731694 taacacacattttccaacacactctttttgattggttaaaatttacatagcttccaccaaatcatgtgggtcccaaataaatttgatgggtctc 12731601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 278
Target Start/End: Complemental strand, 4033147 - 4033043
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgag-----tcccaccaaatcatgtgggtcccatacaa 273  Q
    |||||||| ||||||||||||||||||||||| ||||| | ||| ||| ||||||||||||| |||     || |||||||| |||||||||||||| ||    
T  4033147 taacaacacacattttaacacacacttttcaatacactatctttgattggttaaaattcacacgagtctcatctcaccaaattatgtgggtcccatataa 4033048  T
Q  274 atttg 278  Q
    |||||    
T  4033047 atttg 4033043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 281
Target Start/End: Original strand, 3150209 - 3150295
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtg 281  Q
    |||||| | ||||||||| ||  ||||| ||| ||||||||||||||| ||||||||||||||||||| | ||||| ||||||||||    
T  3150209 aacacatatttttcaacagacaatttttaattggttaaaattcacatgggtcccaccaaatcatgtggattccatataaatttggtg 3150295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 11650922 - 11650979
Alignment:
Q  228 gttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtc 285  Q
    |||||||||||||||  ||||||||||| |||||||||||||| ||||||||||||||    
T  11650922 gttaaaattcacatggatcccaccaaattatgtgggtcccatataaatttggtgggtc 11650979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 282
Target Start/End: Complemental strand, 6643421 - 6643367
Alignment:
Q  228 gttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgg 282  Q
    ||||||||||| ||  ||||||||||||||||||||||||||| |||||||||||    
T  6643421 gttaaaattcatataggtcccaccaaatcatgtgggtcccatataaatttggtgg 6643367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 12424886 - 12424935
Alignment:
Q  188 acattttaacacacacttttcaacacactcttttttattagttaaaattca 238  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  12424886 acattttaacacacacttttcaacacact-ttttttattggttaaaattca 12424935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 3625135 - 3625183
Alignment:
Q  213 cactcttttttattagttaaaattcacatgagtcccaccaaatcatgtg 261  Q
    |||||| ||| |||| |||||||||||||||||||||||||||||||||    
T  3625135 cactctctttgattaattaaaattcacatgagtcccaccaaatcatgtg 3625183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 282
Target Start/End: Complemental strand, 26328277 - 26328213
Alignment:
Q  218 ttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgg 282  Q
    |||||||||  || ||||||||||| || ||||| |||||||||||||||||| |||||||||||    
T  26328277 ttttttattgattgaaattcacatgggttccaccgaatcatgtgggtcccatataaatttggtgg 26328213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 31946970 - 31946914
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattca 238  Q
    ||||| ||||| |||||||||||||||||||||| |||||||||  |||||||||||    
T  31946970 caacacacattctaacacacacttttcaacacacacttttttatcggttaaaattca 31946914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 269
Target Start/End: Complemental strand, 9202648 - 9202574
Alignment:
Q  195 aacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccat 269  Q
    ||||||| |||| | ||||||||| ||  |||||||||||  |||||| |||||||||||||| |||||||||||    
T  9202648 aacacactctttaccacacactctgttcgattagttaaaacacacatgggtcccaccaaatcacgtgggtcccat 9202574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 283
Target Start/End: Complemental strand, 479954 - 479854
Alignment:
Q  182 caacatacattttaaca--cacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttgg 279  Q
    ||||| |||||||||||  ||||||||||||||||| | |||  ||| || |||||||| | ||||| ||||||||||||||||  ||||| ||||||||    
T  479954 caacacacattttaacatacacacttttcaacacaccccttt--attggtcaaaattcatacgagtctcaccaaatcatgtggg-gccatataaatttgg 479858  T
Q  280 tggg 283  Q
    ||||    
T  479857 tggg 479854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 5706771 - 5706711
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatg 242  Q
    ||||| ||||||||||||| ||||||||||||||||| ||| |||  |||||||| |||||    
T  5706771 caacacacattttaacacatacttttcaacacactctctttgattgattaaaatttacatg 5706711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 269
Target Start/End: Original strand, 19711625 - 19711712
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccat 269  Q
    ||||| ||||||||||||| | ||||||| | |||| |||| |||  |||||||| | ||| ||||||| ||||| ||||||||||||    
T  19711625 caacacacattttaacacatatttttcaatatactcgttttaattgattaaaatttatatgggtcccactaaatcgtgtgggtcccat 19711712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 278
Target Start/End: Complemental strand, 9645063 - 9644973
Alignment:
Q  188 acattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttg 278  Q
    ||||| ||||||| ||||| ||||||| ||||||| ||| ||||||||||||||  ||||| | ||||   ||||||||| || |||||||    
T  9645063 acattctaacacatactttccaacacaatctttttgattggttaaaattcacatatgtcccgcaaaatttggtgggtcccgtataaatttg 9644973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 278
Target Start/End: Complemental strand, 9651080 - 9650990
Alignment:
Q  188 acattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttg 278  Q
    ||||| ||||||| ||||| ||||||| ||||||| ||| ||||||||||||||  ||||| | ||||   ||||||||| || |||||||    
T  9651080 acattctaacacatactttccaacacaatctttttgattggttaaaattcacatatgtcccgcaaaatttggtgggtcccgtataaatttg 9650990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 240
Target Start/End: Complemental strand, 17390049 - 17389991
Alignment:
Q  182 caacatacattttaacacacacttttcaacacactcttttttattagttaaaattcaca 240  Q
    ||||| |||||||||||| || |||||||||| |||| ||| ||| |||||||||||||    
T  17390049 caacacacattttaacacgcaattttcaacactctctctttgattggttaaaattcaca 17389991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 255
Target Start/End: Complemental strand, 11651045 - 11650968
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattag-ttaaaattcacatgagtcccaccaaat 255  Q
    ||||||||||||||||||||| || ||||||||| | ||| ||| ||| | |||||||| ||||| | ||||||||||    
T  11651045 taacaacatacattttaacacgcatttttcaacataatctctttgattggcttaaaatttacatgggacccaccaaat 11650968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 12731557 - 12731614
Alignment:
Q  198 acacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    |||||||| |||||||| ||| ||| ||| ||||||||||||||||| |||| |||||    
T  12731557 acacacttctcaacacattctctttgattggttaaaattcacatgagacccatcaaat 12731614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 17600760 - 17600695
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgag 244  Q
    |||||||| ||||||||||| ||| ||||||||| | ||| ||| ||| ||||||| |||||||||    
T  17600760 taacaacacacattttaacaaacatttttcaacatattctctttgattggttaaaactcacatgag 17600695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 31945733 - 31945680
Alignment:
Q  228 gttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtg 281  Q
    |||||||||||||  ||||| || ||||||||||| ||||||| ||||||||||    
T  31945733 gttaaaattcacacaagtcctacaaaatcatgtggatcccatataaatttggtg 31945680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 277
Target Start/End: Complemental strand, 31989280 - 31989191
Alignment:
Q  188 acattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaattt 277  Q
    ||||||||||  ||||||||||| | | ||| ||| ||| ||||||||  |||||  ||||| |||||||||||||||| ||| ||||||    
T  31989280 acattttaaccaacacttttcaatatattctctttgatttgttaaaatatacatggatcccaacaaatcatgtgggtccaatataaattt 31989191  T

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Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 5706641 - 5706693
Alignment:
Q  218 ttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccata 270  Q
    ||||||||| ||||||||||| |||  ||||||||||||||||| ||| ||||    
T  5706641 ttttttattggttaaaattcatatggatcccaccaaatcatgtgcgtctcata 5706693  T

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Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 24783890 - 24783958
Alignment:
Q  219 tttttattagttaaaattcacatgagtcccaccaaatcatgtgggtcccatacaaatttggtgggtctc 287  Q
    |||| ||| ||||||||||| |||  |||||||||||||||||| | ||||| ||||||| ||| ||||    
T  24783890 ttttgattcgttaaaattcatatggatcccaccaaatcatgtggattccatataaatttgatggatctc 24783958  T

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Target: scaffold0137 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 268
Target Start/End: Complemental strand, 8334 - 8246
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtccca 268  Q
    ||||||||||||||| ||||||||||||||||| || ||||||| ||| | |||||||||||||| ||||||||||| ||||||| ||||    
T  8334 taacaacatacattt-aacacacacttttcaacgcattctttttgattggctaaaattcacatgaatcccaccaaattatgtgggaccca 8246  T

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Target: scaffold0015 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 201112 - 201026
Alignment:
Q  179 taacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaatcatgtgggtc 265  Q
    |||||| | |||||||||||||||||| |||||||||||| ||| ||| ||||| ||||||||| ||||||| |||||| |||||||    
T  201112 taacaatacacattttaacacacacttatcaacacactctctttgatttgttaagattcacatgtgtcccactaaatcaggtgggtc 201026  T

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Target: scaffold0015; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 200941 - 201018
Alignment:
Q  178 ataacaacatacattttaacacacacttttcaacacactcttttttattagttaaaattcacatgagtcccaccaaat 255  Q
    ||||| ||| ||||||||||||| | ||||||||||| |||| || ||| ||||||||||||||  | ||||||||||    
T  200941 ataactacaaacattttaacacatatttttcaacacattcttcttaattggttaaaattcacattggacccaccaaat 201018  T

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