View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1078_low_1 (Length: 727)
Name: NF1078_low_1
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1078_low_1 |
 | |
|
| [»] scaffold0063 (3 HSPs) |
| | |
|
| [»] scaffold0084 (1 HSPs) |
| | |
|
| [»] scaffold0126 (1 HSPs) |
| | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
| [»] scaffold0065 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 179 - 717
Target Start/End: Complemental strand, 15538087 - 15537549
Alignment:
| Q |
179 |
cagagagattacaaacaaagagggggccataatggctgagttcccagatgaacaactgttcaacgtgagagaaaggccatggtttgctgacatggctaac |
278 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15538087 |
cagagaggttacaaacaaagagggggctataatggctgagttcccagatgaacaactgttcaacgtgcgagaaaggccatggtttgctgacatggctaac |
15537988 |
T |
|
| Q |
279 |
tttaaggtcgggaatatgattcctgatgatttgagctagcaggagaagaagaaattcttcaaggatgcaaaccactacttgtgggatgatccttacttat |
378 |
Q |
| |
|
||||||| ||||||| | |||||||||||||| |||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15537987 |
tttaaggccgggaatttaattcctgatgatttaagctggcaagagaagaggaaattctttaaggatgcaaaccactacttgtgggatgatccttacttat |
15537888 |
T |
|
| Q |
379 |
ttaaggtaagcactgacgggttaataagacgttgtgttgcaggagaggaagctaagagcataatgtggcactgccataactcagcttatgaaggccacca |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15537887 |
ttaaggtaagcactgacgggttaataagacgttgtgttgcaggagaggaagcgaagagcataatgtggcactgccataactcagcttatggaggccacca |
15537788 |
T |
|
| Q |
479 |
cagtggtgaaagaacagccgccaaaattctacagagtgggttctggtggcccacactcttcaaggattgccatgaatttgtccgacactgtgacaagtgt |
578 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
15537787 |
cagcggtgaaagaacagccgctaaaattctacatagtgggttctggtggcccacactcttcaaagattgtcatgaatttgtcagacactgtgacaagtgt |
15537688 |
T |
|
| Q |
579 |
caaagaacaggtaatatctcaaaaagaaatgaggtgcccttaaatggtgttttagaaattgaaccctttgattgttggggaatcgatttcatgggaccat |
678 |
Q |
| |
|
||||||||||||||||||||||| || |||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15537687 |
caaagaacaggtaatatctcaaagaggaatgaggtactcttaaatggtattttagaaattgaaccctttgattgttggggaatcgatttcatgggaccat |
15537588 |
T |
|
| Q |
679 |
ttccttcctcttattctcacttgtatatccttgtctgtg |
717 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15537587 |
ttccctcctcttattctcacttgtatatccttgtctgtg |
15537549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 336 - 691
Target Start/End: Complemental strand, 34138538 - 34138183
Alignment:
| Q |
336 |
ttcaaggatgcaaaccactacttgtgggatgatccttacttatttaaggtaagcactgacgggttaataagacgttgtgttgcaggagaggaagctaaga |
435 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||| || || ||||||||||||||||| ||||||||| | | |
|
|
| T |
34138538 |
ttcaaggatgcaaaccactatgtgtgggatgatccttatctctttaaggtaagcactgacggtttgatgagacgttgtgttgcaggtgaggaagctcata |
34138439 |
T |
|
| Q |
436 |
gcataatgtggcactgccataactcagcttatgaaggccaccacagtggtgaaagaacagccgccaaaattctacagagtgggttctggtggcccacact |
535 |
Q |
| |
|
| || |||||||||||||||| ||||||||||| ||||||||| ||||| ||||||||||| || || | | || ||||| |||||||||||||| || |
|
|
| T |
34138438 |
gtatcatgtggcactgccatagctcagcttatggaggccaccatagtggagaaagaacagctgctaaggtgttgcaaagtggattctggtggcccaccct |
34138339 |
T |
|
| Q |
536 |
cttcaaggattgccatgaatttgtccgacactgtgacaagtgtcaaagaacaggtaatatctcaaaaagaaatgaggtgcccttaaatggtgttttagaa |
635 |
Q |
| |
|
|||||| ||||||| || ||||| || |||||||| || ||||||||||||| | | || || || |||||| ||||| ||| || | | ||| |
|
|
| T |
34138338 |
tttcaagtattgccacgactttgttgcacggtgtgacaaatgccaaagaacaggtagtgtttctaagaggaatgagatgcccctaacaggaatcattgaa |
34138239 |
T |
|
| Q |
636 |
attgaaccctttgattgttggggaatcgatttcatgggaccatttccttcctctta |
691 |
Q |
| |
|
||||||| |||||||||||||| || || || ||||||||||| ||||||||||| |
|
|
| T |
34138238 |
gttgaaccatttgattgttggggcattgactttatgggaccattcccttcctctta |
34138183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 15537789 - 15537692
Alignment:
| Q |
1 |
cacagcggtgaaagaacagccgctaaaattctacagagtgggttctggtggcccacactcttcaaggattgccatgaatttgtccgacactgtgacaa |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |
|
|
| T |
15537789 |
cacagcggtgaaagaacagccgctaaaattctacatagtgggttctggtggcccacactcttcaaagattgtcatgaatttgtcagacactgtgacaa |
15537692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 420; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 182 - 717
Target Start/End: Original strand, 22233486 - 22234021
Alignment:
| Q |
182 |
agagattacaaacaaagagggggccataatggctgagttcccagatgaacaactgttcaacgtgagagaaaggccatggtttgctgacatggctaacttt |
281 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22233486 |
agaggttacaagcaaagagggggccataatggctgagttcctagatgaacaattgttcaacgtgagagaaaggccatggtttgctgacatggctaacttt |
22233585 |
T |
|
| Q |
282 |
aaggtcgggaatatgattcctgatgatttgagctagcaggagaagaagaaattcttcaaggatgcaaaccactacttgtgggatgatccttacttattta |
381 |
Q |
| |
|
|||| ||||||| | |||||||||||||| |||| ||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22233586 |
aaggccgggaatttaattcctgatgatttaagctggcaagagaagaggaaattctttaaggatgcaaaccactacttgtgggatgatccttacttattta |
22233685 |
T |
|
| Q |
382 |
aggtaagcactgacgggttaataagacgttgtgttgcaggagaggaagctaagagcataatgtggcactgccataactcagcttatgaaggccaccacag |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| || |||||||||||| |
|
|
| T |
22233686 |
aggtaagcactgacgggttaataagacgttgtgttgcaggagaggaagcaaagagcataatgtggcactgtcataactcagcttttggaggccaccacag |
22233785 |
T |
|
| Q |
482 |
tggtgaaagaacagccgccaaaattctacagagtgggttctggtggcccacactcttcaaggattgccatgaatttgtccgacactgtgacaagtgtcaa |
581 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
22233786 |
tagtgaaagaacagccgccaaaattctacagagtgggttctggtgtcccacactcttcaaggattgccatgaatttgtccgacactgtgacatgtgtgaa |
22233885 |
T |
|
| Q |
582 |
agaacaggtaatatctcaaaaagaaatgaggtgcccttaaatggtgttttagaaattgaaccctttgattgttggggaatcgatttcatgggaccatttc |
681 |
Q |
| |
|
|||||||||||||||||||| || |||||||| |||||||||||| | ||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22233886 |
agaacaggtaatatctcaaagaggaatgaggtacccttaaatggtatcttagaaattgaacccattgattgttggggaatcgatttcgtgggaccatttc |
22233985 |
T |
|
| Q |
682 |
cttcctcttattctcacttgtatatccttgtctgtg |
717 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
22233986 |
cttcttcttactctcacttgtatatccttgtctgtg |
22234021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 195 - 691
Target Start/End: Original strand, 24404843 - 24405339
Alignment:
| Q |
195 |
aaagagggggccataatggctgagttcccagatgaacaactgttcaacgtgagagaaaggccatggtttgctgacatggctaactttaaggtcgggaata |
294 |
Q |
| |
|
||||| || ||||| ||||||||||| || |||||| ||||||| | | ||| |||||| |||||||||||||||| |||||||||| ||| || | |
|
|
| T |
24404843 |
aaagaaggagccatcatggctgagtttcccgatgaaaaactgtttgccattggagcaaggccttggtttgctgacatggtgaactttaaggccggtaaca |
24404942 |
T |
|
| Q |
295 |
tgattcctgatgatttgagctagcaggagaagaagaaattcttcaaggatgcaaaccactacttgtgggatgatccttacttatttaaggtaagcactga |
394 |
Q |
| |
|
| | |||||||| ||| || || ||| ||| || ||||||||||||||||||||||| |||||||||||||||| | ||||||||| ||||||| |
|
|
| T |
24404943 |
tagtgcctgatgacttggagtatcatcagaggaaaaagttcttcaaggatgcaaaccactatgtgtgggatgatccttatctgtttaaggtaggcactga |
24405042 |
T |
|
| Q |
395 |
cgggttaataagacgttgtgttgcaggagaggaagctaagagcataatgtggcactgccataactcagcttatgaaggccaccacagtggtgaaagaaca |
494 |
Q |
| |
|
||| || || ||||||||||||||||| ||||||||| | || || ||||||||||||||| ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
24405043 |
cggtttgatgagacgttgtgttgcaggtgaggaagctcatagtatcctgtggcactgccatagctcagcttatgggggccaccacagtggagaaagaaca |
24405142 |
T |
|
| Q |
495 |
gccgccaaaattctacagagtgggttctggtggcccacactcttcaaggattgccatgaatttgtccgacactgtgacaagtgtcaaagaacaggtaata |
594 |
Q |
| |
|
|||| || | | || ||||| ||| ||||||||| || ||||| |||||||| || ||||| || |||||||| || || || | ||||| || |
|
|
| T |
24405143 |
gccgttaaggtgttgcaaagtggattcatgtggcccacccttttcaaagattgccacgactttgttgcacgatgtgacaaatgccagaggaaaggtagta |
24405242 |
T |
|
| Q |
595 |
tctcaaaaagaaatgaggtgcccttaaatggtgttttagaaattgaaccctttgattgttggggaatcgatttcatgggaccatttccttcctctta |
691 |
Q |
| |
|
| || || || |||||| ||| | ||| || | | ||| ||||||| |||||||||||||| || || || ||||||||||| ||||||||||| |
|
|
| T |
24405243 |
tttctaagaggaatgagatgcgcctaacaggaatcattgaagttgaaccatttgattgttggggcattgactttatgggaccattcccttcctctta |
24405339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 22233788 - 22233877
Alignment:
| Q |
8 |
gtgaaagaacagccgctaaaattctacagagtgggttctggtggcccacactcttcaaggattgccatgaatttgtccgacactgtgaca |
97 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22233788 |
gtgaaagaacagccgccaaaattctacagagtgggttctggtgtcccacactcttcaaggattgccatgaatttgtccgacactgtgaca |
22233877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 336 - 617
Target Start/End: Original strand, 22944394 - 22944675
Alignment:
| Q |
336 |
ttcaaggatgcaaaccactacttgtgggatgatccttacttatttaaggtaagcactgacgggttaataagacgttgtgttgcaggagaggaagctaaga |
435 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| | || ||||||||||||||||| || || ||||||||||||||||| || || || | |
|
|
| T |
22944394 |
ttcaaggatgcaaaccactatttgtgggatgatccttatctgttcaaggtaagcactgacggtttgattagacgttgtgttgcaggtgaagagatcaaaa |
22944493 |
T |
|
| Q |
436 |
gcataatgtggcactgccataactcagcttatgaaggccaccacagtggtgaaagaacagccgccaaaattctacagagtgggttctggtggcccacact |
535 |
Q |
| |
|
||| ||||||| ||||||| ||||||||||| ||||| || || || |||||||| || || ||| | | || || || ||||||||||| || || |
|
|
| T |
22944494 |
acattgtgtggcattgccatagctcagcttatgggggccatcatagcggcgaaagaaccgctgcgaaagtcttgcaaagcggtttctggtggcctactct |
22944593 |
T |
|
| Q |
536 |
cttcaaggattgccatgaatttgtccgacactgtgacaagtgtcaaagaacaggtaatatctcaaaaagaaatgaggtgccc |
617 |
Q |
| |
|
||||||||| |||||||| ||||| | | |||||||| || ||||||||||||| ||| || || || |||||| ||||| |
|
|
| T |
22944594 |
cttcaaggactgccatgattttgtgaggcggtgtgacaattgccaaagaacaggtagtatttctaagaggaatgagatgccc |
22944675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 336 - 617
Target Start/End: Original strand, 23866838 - 23867119
Alignment:
| Q |
336 |
ttcaaggatgcaaaccactacttgtgggatgatccttacttatttaaggtaagcactgacgggttaataagacgttgtgttgcaggagaggaagctaaga |
435 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| | || ||||||||||||||||| || || ||||||||||||||||| || || || | |
|
|
| T |
23866838 |
ttcaaggatgcaaaccactatttgtgggatgatccttatctgttcaaggtaagcactgacggtttgattagacgttgtgttgcaggtgaagagatcaaaa |
23866937 |
T |
|
| Q |
436 |
gcataatgtggcactgccataactcagcttatgaaggccaccacagtggtgaaagaacagccgccaaaattctacagagtgggttctggtggcccacact |
535 |
Q |
| |
|
||| ||||||| ||||||| ||||||||||| ||||| || || || |||||||| || || ||| | | || || || ||||||||||| || || |
|
|
| T |
23866938 |
acattgtgtggcattgccatagctcagcttatgggggccatcatagcggcgaaagaaccgctgcgaaagtcttgcaaagcggtttctggtggcctactct |
23867037 |
T |
|
| Q |
536 |
cttcaaggattgccatgaatttgtccgacactgtgacaagtgtcaaagaacaggtaatatctcaaaaagaaatgaggtgccc |
617 |
Q |
| |
|
||||||||| |||||||| ||||| | | |||||||| || ||||||||||||| ||| || || || |||||| ||||| |
|
|
| T |
23867038 |
cttcaaggactgccatgattttgtgaggcggtgtgacaattgccaaagaacaggtagtatttctaagaggaatgagatgccc |
23867119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 396 - 717
Target Start/End: Complemental strand, 12493 - 12172
Alignment:
| Q |
396 |
gggttaataagacgttgtgttgcaggagaggaagctaagagcataatgtggcactgccataactcagcttatgaaggccaccacagtggtgaaagaacag |
495 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
12493 |
gggttaataagacgttgtgttgctggagaggaagcaaagagcataatgtggcactgtcataactcagcttatggaggccaccacagcggtgaaagaacag |
12394 |
T |
|
| Q |
496 |
ccgccaaaattctacagagtgggttctggtggcccacactcttcaaggattgccatgaatttgtccgacactgtgacaagtgtcaaagaacaggtaatat |
595 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12393 |
ccgctaaaattctacatagtgggttctggtggcccacacttttcaaggattgccatgaatttgtccgacattgtgacaagtgtcaaagaacaggtaatat |
12294 |
T |
|
| Q |
596 |
ctcaaaaagaaatgaggtgcccttaaatggtgttttagaaattgaaccctttgattgttggggaatcgatttcatgggaccatttccttcctcttattct |
695 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
12293 |
ctcaaaaagaaatgaggtgcccttaaatggtattttagaaattgaaccctttgactgttggggtatcgatttcatgggaccatttccctcctcttactct |
12194 |
T |
|
| Q |
696 |
cacttgtatatccttgtctgtg |
717 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
12193 |
aacttgtatatccttgtttgtg |
12172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 179 - 363
Target Start/End: Complemental strand, 12675 - 12491
Alignment:
| Q |
179 |
cagagagattacaaacaaagagggggccataatggctgagttcccagatgaacaactgttcaacgtgagagaaaggccatggtttgctgacatggctaac |
278 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12675 |
cagagaggttacaaacaaagagggggccataatggttgagttcccagatgaacaactgttcaacgtgtgagaaaggccatggtttgctgacatggctaac |
12576 |
T |
|
| Q |
279 |
tttaaggtcgggaatatgattcctgatgatttgagctagcaggagaagaagaaattcttcaaggatgcaaaccactacttgtggg |
363 |
Q |
| |
|
||||||| ||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12575 |
tttaaggccggaaatttgattcctgatgatttgagctggcaggagaagaagaaattcttcaaggatgcaaaccactacttgtggg |
12491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 12412 - 12315
Alignment:
| Q |
1 |
cacagcggtgaaagaacagccgctaaaattctacagagtgggttctggtggcccacactcttcaaggattgccatgaatttgtccgacactgtgacaa |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12412 |
cacagcggtgaaagaacagccgctaaaattctacatagtgggttctggtggcccacacttttcaaggattgccatgaatttgtccgacattgtgacaa |
12315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 2e-69; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 247 - 691
Target Start/End: Original strand, 22022081 - 22022525
Alignment:
| Q |
247 |
gagaaaggccatggtttgctgacatggctaactttaaggtcgggaatatgattcctgatga-tttgagctagcaggagaagaagaaattcttcaaggatg |
345 |
Q |
| |
|
|||||||||| ||||||||||||||||| || ||||||| ||| || || | |||||||| |||||| || || ||| ||| || || |||||||||| |
|
|
| T |
22022081 |
gagaaaggccttggtttgctgacatggcaaattttaaggccggtaacatagtacctgatgactttgag-tatcatcagaggaaaaagtttttcaaggatg |
22022179 |
T |
|
| Q |
346 |
caaaccactacttgtgggatgatccttacttatttaaggtaagcactgacgggttaataagacgttgtgttgcaggagaggaagctaagagcataatgtg |
445 |
Q |
| |
|
|||||||||| |||||||||||||||| | |||||||||||||||||||| || || ||||||||||||||||| ||||||||| | || || ||||| |
|
|
| T |
22022180 |
caaaccactatgtgtgggatgatccttatctctttaaggtaagcactgacggtttgatgagacgttgtgttgcaggtgaggaagctcatagtatcatgtg |
22022279 |
T |
|
| Q |
446 |
gcactgccataactcagcttatgaaggccaccacagtggtgaaagaacagccgccaaaattctacagagtgggttctggtggcccacactcttcaaggat |
545 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| ||||| |||||||||||||| || | | || ||||| |||||||||||||| || ||||||||| |
|
|
| T |
22022280 |
gcactgccatagctcagcttatggaggccaccatagtggagaaagaacagccgctaaggtgttgcaaagtggattctggtggcccacccttttcaaggat |
22022379 |
T |
|
| Q |
546 |
tgccatgaatttgtccgacactgtgacaagtgtcaaagaacaggtaatatctcaaaaagaaatgaggtgcccttaaatggtgttttagaaattgaaccct |
645 |
Q |
| |
|
||||| || ||||| || |||||||| || ||||||||||||| ||| || || || |||||| ||| | ||| || | | ||| ||||||| | |
|
|
| T |
22022380 |
tgccacgactttgttgcacggtgtgacaaatgccaaagaacaggtagtatttctaagaggaatgagatgcgcctaacaggaatcattgaagttgaaccat |
22022479 |
T |
|
| Q |
646 |
ttgattgttggggaatcgatttcatgggaccatttccttcctctta |
691 |
Q |
| |
|
||||||||||||| || || || ||||||||||| ||||||||||| |
|
|
| T |
22022480 |
ttgattgttggggcattgactttatgggaccattcccttcctctta |
22022525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 411 - 695
Target Start/End: Complemental strand, 6770579 - 6770295
Alignment:
| Q |
411 |
tgtgttgcaggagaggaagctaagagcataatgtggcactgccataactcagcttatgaaggccaccacagtggtgaaagaacagccgccaaaattctac |
510 |
Q |
| |
|
||||||||||| || |||| || ||||| ||||||||||| |||| |||||| |||| ||||||||| ||||||||||| || || ||||||||| ||| |
|
|
| T |
6770579 |
tgtgttgcaggtgatgaagtgaaaagcattatgtggcactgtcatagctcagcgtatggaggccaccatagtggtgaaaggaccgctgccaaaattttac |
6770480 |
T |
|
| Q |
511 |
agagtgggttctggtggcccacactcttcaaggattgccatgaatttgtccgacactgtgacaagtgtcaaagaacaggtaatatctcaaaaagaaatga |
610 |
Q |
| |
|
| ||||||||||||||||| || | || ||||||||||| || || ||| ||||||| |||||||||||||| |||||||| || || | || ||||| |
|
|
| T |
6770479 |
aaagtgggttctggtggcctactttgtttaaggattgccaagagttcgtcagacactgcgacaagtgtcaaaggacaggtaacatatctaggaggaatga |
6770380 |
T |
|
| Q |
611 |
ggtgcccttaaatggtgttttagaaattgaaccctttgattgttggggaatcgatttcatgggaccatttccttcctcttattct |
695 |
Q |
| |
|
| ||||| | || || | | || |||||||| || ||||||||||| |||||||||||||| ||||| || ||||| |||||| |
|
|
| T |
6770379 |
gatgcccctcaagggaatccttgagattgaaccattcgattgttggggcatcgatttcatgggtccattcccatcctcctattct |
6770295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 189 - 690
Target Start/End: Complemental strand, 18501066 - 18500565
Alignment:
| Q |
189 |
acaaacaaagagggggccataatggctgagttcccagatgaacaactgttcaacgtgagagaaaggccatggtttgctgacatggctaactttaaggtcg |
288 |
Q |
| |
|
||||| ||||| |||||||| |||||||| || || ||||| || ||||| | |||||||| || |||||||| |||||||| || || |||| || |
|
|
| T |
18501066 |
acaaagaaagaaggggccatcatggctgaatttccggatgagcagctgtttgcaataagagaaagaccttggtttgccgacatggcaaatttcaaggccg |
18500967 |
T |
|
| Q |
289 |
ggaatatgattcctgatgatttg-agctagcaggagaagaagaaattcttcaaggatgcaaaccactacttgtgggatgatccttacttatttaaggtaa |
387 |
Q |
| |
|
|||| || ||||||||||| || ||| |||| | | ||| || || |||||||||||||||||||| ||||||||||||||||| | || ||||||| |
|
|
| T |
18500966 |
ggaacataattcctgatgacatggagc-agcatcaaaggaaaaagtttttcaaggatgcaaaccactatttgtgggatgatccttatctgttcaaggtaa |
18500868 |
T |
|
| Q |
388 |
gcactgacgggttaataagacgttgtgttgcaggagaggaagctaagagcataatgtggcactgccataactcagcttatgaaggccaccacagtggtga |
487 |
Q |
| |
|
|||||||||| || || ||||||||||||||||| || || || | ||| ||||||| ||||||| ||||||||||| |||||||| || || || |
|
|
| T |
18500867 |
gcactgacggtttgattagacgttgtgttgcaggtgaagagatcaaaaacattgtgtggcattgccatagctcagcttatgggggccaccatagcggcga |
18500768 |
T |
|
| Q |
488 |
aagaacagccgccaaaattctacagagtgggttctggtggcccacactcttcaaggattgccatgaatttgtccgacactgtgacaagtgtcaaagaaca |
587 |
Q |
| |
|
| |||| || || ||| | | || || |||||||||||||| || || ||||||||||||||||| ||||| | | |||||||| || ||||||||| |
|
|
| T |
18500767 |
acgaaccgctgcgaaagtcttgcaaagcgggttctggtggcctactcttttcaaggattgccatgattttgtgaggcggtgtgacaattgccaaagaaca |
18500668 |
T |
|
| Q |
588 |
ggtaatatctcaaaaagaaatgaggtgcccttaaatggtgttttagaaattgaaccctttgattgttggggaatcgatttcatgggaccatttccttcct |
687 |
Q |
| |
|
|||| ||| || || || |||||| ||||| ||| || | | ||| ||||||| ||||| |||||||| || ||||| |||||||| || ||| ||| |
|
|
| T |
18500667 |
ggtagtatttctaagaggaatgagatgcccctaacgggaatcattgaagttgaaccatttgactgttggggcattgattttatgggacccttccctccct |
18500568 |
T |
|
| Q |
688 |
ctt |
690 |
Q |
| |
|
||| |
|
|
| T |
18500567 |
ctt |
18500565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 336 - 690
Target Start/End: Complemental strand, 5892327 - 5891973
Alignment:
| Q |
336 |
ttcaaggatgcaaaccactacttgtgggatgatccttacttatttaaggtaagcactgacgggttaataagacgttgtgttgcaggagaggaagctaaga |
435 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| | || |||||| |||||||||| || || ||||||||||||||||| || || || | |
|
|
| T |
5892327 |
ttcaaggatgcaaaccactatttgtgggatgatccttatctgttcaaggtaggcactgacggtttgattagacgttgtgttgcaggtgaagagatcaaaa |
5892228 |
T |
|
| Q |
436 |
gcataatgtggcactgccataactcagcttatgaaggccaccacagtggtgaaagaacagccgccaaaattctacagagtgggttctggtggcccacact |
535 |
Q |
| |
|
||| ||||||| ||||||| |||||| |||| |||||||| || || ||| |||| || || ||| | | || || |||||||||||||| || || |
|
|
| T |
5892227 |
acattgtgtggcattgccatagctcagcctatgggggccaccatagcggcgaacgaaccgctgcgaaagtcttgcaaagcgggttctggtggcctactct |
5892128 |
T |
|
| Q |
536 |
cttcaaggattgccatgaatttgtccgacactgtgacaagtgtcaaagaacaggtaatatctcaaaaagaaatgaggtgcccttaaatggtgttttagaa |
635 |
Q |
| |
|
||||||||||||||||| ||||| | | |||||||| || ||||||||||||| ||| || || || |||||| ||||| ||| || | | ||| |
|
|
| T |
5892127 |
tttcaaggattgccatgattttgtgaggcggtgtgacaattgccaaagaacaggtagtatttctaagaggaatgagatgcccctaacgggaatcattgaa |
5892028 |
T |
|
| Q |
636 |
attgaaccctttgattgttggggaatcgatttcatgggaccatttccttcctctt |
690 |
Q |
| |
|
||||||| ||||| |||||||| || ||||| |||||||| || ||| |||||| |
|
|
| T |
5892027 |
gttgaaccatttgactgttggggcattgattttatgggacccttccctccctctt |
5891973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 336 - 690
Target Start/End: Complemental strand, 16319925 - 16319571
Alignment:
| Q |
336 |
ttcaaggatgcaaaccactacttgtgggatgatccttacttatttaaggtaagcactgacgggttaataagacgttgtgttgcaggagaggaagctaaga |
435 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| | || ||||||||||||||||| || || ||||||||||||||||| | || || | |
|
|
| T |
16319925 |
ttcaaggatgcaaaccactatttgtgggatgatccttatctgttcaaggtaagcactgacggtttgattagacgttgtgttgcaggtgcagagatcaaaa |
16319826 |
T |
|
| Q |
436 |
gcataatgtggcactgccataactcagcttatgaaggccaccacagtggtgaaagaacagccgccaaaattctacagagtgggttctggtggcccacact |
535 |
Q |
| |
|
||| ||||||| ||||||| ||||||||||| |||||||| || || |||||||| || || ||| | || || ||||| |||| ||||| || || |
|
|
| T |
16319825 |
acattgtgtggcattgccatagctcagcttatgggggccaccatagcggcgaaagaaccgctgcgaaagtcctgcaaagtggtttctaatggccgactct |
16319726 |
T |
|
| Q |
536 |
cttcaaggattgccatgaatttgtccgacactgtgacaagtgtcaaagaacaggtaatatctcaaaaagaaatgaggtgcccttaaatggtgttttagaa |
635 |
Q |
| |
|
|||||||| |||||||| ||||| | | |||||||| || ||||||||||||| ||| || || || |||||| ||||| ||| || | | ||| |
|
|
| T |
16319725 |
tttcaaggactgccatgattttgtgaggcggtgtgacaattgccaaagaacaggtagtatttctaagaggaatgagatgcccctaacgggaatcattgaa |
16319626 |
T |
|
| Q |
636 |
attgaaccctttgattgttggggaatcgatttcatgggaccatttccttcctctt |
690 |
Q |
| |
|
||||||| ||||| |||||| | || ||||| |||||||| || ||| |||||| |
|
|
| T |
16319625 |
gttgaaccatttgactgttggcgcattgattttatgggacctttccctccctctt |
16319571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 336 - 690
Target Start/End: Complemental strand, 18512001 - 18511647
Alignment:
| Q |
336 |
ttcaaggatgcaaaccactacttgtgggatgatccttacttatttaaggtaagcactgacgggttaataagacgttgtgttgcaggagaggaagctaaga |
435 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| | || ||||||||||||||||| || || ||||||||||||||||| | || || | |
|
|
| T |
18512001 |
ttcaaggatgcaaaccactatttgtgggatgatccttatctgttcaaggtaagcactgacggtttgattagacgttgtgttgcaggtgtagagatcaaaa |
18511902 |
T |
|
| Q |
436 |
gcataatgtggcactgccataactcagcttatgaaggccaccacagtggtgaaagaacagccgccaaaattctacagagtgggttctggtggcccacact |
535 |
Q |
| |
|
||| ||||||| ||||||| ||||||||||| |||||||| || || |||||||| || || ||| | || || ||||| |||| ||||| || || |
|
|
| T |
18511901 |
acattgtgtggcattgccatagctcagcttatgggggccaccatagcggcgaaagaaccgctgcgaaagtcctgcaaagtggtttctaatggccgactct |
18511802 |
T |
|
| Q |
536 |
cttcaaggattgccatgaatttgtccgacactgtgacaagtgtcaaagaacaggtaatatctcaaaaagaaatgaggtgcccttaaatggtgttttagaa |
635 |
Q |
| |
|
|||||||| |||||||| ||||| | | |||||||| || ||||||||||||| ||| || || || |||||| ||||| ||| || | | ||| |
|
|
| T |
18511801 |
tttcaaggactgccatgattttgtgaggcggtgtgacaattgccaaagaacaggtagtatttctaagaggaatgagatgcccctaacgggaatcattgaa |
18511702 |
T |
|
| Q |
636 |
attgaaccctttgattgttggggaatcgatttcatgggaccatttccttcctctt |
690 |
Q |
| |
|
||||||| ||||| |||||| | || ||||| |||||||| || ||| |||||| |
|
|
| T |
18511701 |
gttgaaccatttgactgttggtgcattgattttatgggacctttccctccctctt |
18511647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 438 - 559
Target Start/End: Complemental strand, 36538100 - 36537980
Alignment:
| Q |
438 |
ataatgtggcactgccataactcagcttatgaaggccaccacagtggtgaaagaacagccgccaaaattctacagagtgggttctggtggcccacactct |
537 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| ||| |||| ||||| || ||||| || || ||| || | || ||||| |||||||||||||| || | |
|
|
| T |
36538100 |
ataatgtggcattgccatagctcagcttatgggggc-accatagtggagatagaaccgctgcaaaagttttgcaaagtggcttctggtggcccacccttt |
36538002 |
T |
|
| Q |
538 |
tcaaggattgccatgaatttgt |
559 |
Q |
| |
|
||||||||||||| || ||||| |
|
|
| T |
36538001 |
tcaaggattgccaagactttgt |
36537980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 22022320 - 22022393
Alignment:
| Q |
10 |
gaaagaacagccgctaaaattctacagagtgggttctggtggcccacactcttcaaggattgccatgaatttgt |
83 |
Q |
| |
|
||||||||||||||||| | | || ||||| |||||||||||||| || |||||||||||||| || ||||| |
|
|
| T |
22022320 |
gaaagaacagccgctaaggtgttgcaaagtggattctggtggcccacccttttcaaggattgccacgactttgt |
22022393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 1e-64; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 247 - 691
Target Start/End: Complemental strand, 26141408 - 26140964
Alignment:
| Q |
247 |
gagaaaggccatggtttgctgacatggctaactttaaggtcgggaatatgattcctgatga-tttgagctagcaggagaagaagaaattcttcaaggatg |
345 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||||||| ||| || || | |||||||| |||||| || || ||| ||| || || |||||||||| |
|
|
| T |
26141408 |
gagaaagaccttggtttgctgacatggcgaactttaaggccggtaacatagtgcctgatgactttgag-tatcatcagaggaaaaagtttttcaaggatg |
26141310 |
T |
|
| Q |
346 |
caaaccactacttgtgggatgatccttacttatttaaggtaagcactgacgggttaataagacgttgtgttgcaggagaggaagctaagagcataatgtg |
445 |
Q |
| |
|
|||||||||| |||||||||||||||| | ||||||||||||||||||||||| || ||||||||||||||||| ||||||||| | || || ||||| |
|
|
| T |
26141309 |
caaaccactatgtgtgggatgatccttatctctttaaggtaagcactgacgggttgatgagacgttgtgttgcaggtgaggaagctcatagtatcatgtg |
26141210 |
T |
|
| Q |
446 |
gcactgccataactcagcttatgaaggccaccacagtggtgaaagaacagccgccaaaattctacagagtgggttctggtggcccacactcttcaaggat |
545 |
Q |
| |
|
|||||| |||| ||||||||||| ||||||||| ||||| ||||||||| |||| || | | || ||||| |||||||||||||| || ||||||||| |
|
|
| T |
26141209 |
gcactgtcatagctcagcttatggaggccaccatagtggagaaagaacaaccgctaaggtgttgcaaagtggattctggtggcccacccttttcaaggat |
26141110 |
T |
|
| Q |
546 |
tgccatgaatttgtccgacactgtgacaagtgtcaaagaacaggtaatatctcaaaaagaaatgaggtgcccttaaatggtgttttagaaattgaaccct |
645 |
Q |
| |
|
||||| || ||||| || |||||||| || ||||| ||||||| ||| || || || |||||| ||||| ||| || | | ||| ||||||| | |
|
|
| T |
26141109 |
tgccacgactttgttgcacggtgtgacaaatgccaaaggacaggtagtatttctaagaggaatgagatgcccctaacaggaatcattgaagttgaaccat |
26141010 |
T |
|
| Q |
646 |
ttgattgttggggaatcgatttcatgggaccatttccttcctctta |
691 |
Q |
| |
|
||||||||||||| || || || |||||||| || ||||||||||| |
|
|
| T |
26141009 |
ttgattgttggggcattgactttatgggaccgttcccttcctctta |
26140964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 579 - 692
Target Start/End: Complemental strand, 4590311 - 4590198
Alignment:
| Q |
579 |
caaagaacaggtaatatctcaaaaagaaatgaggtgcccttaaatggtgttttagaaattgaaccctttgattgttggggaatcgatttcatgggaccat |
678 |
Q |
| |
|
||||||||| |||||||||| ||||| |||||| ||||| ||||| |||||||||||||||| |||||||||||||| || || |||||| |||| | |
|
|
| T |
4590311 |
caaagaacaagtaatatctctaaaaggaatgagatgccccataatggaattttagaaattgaaccttttgattgttggggcattgacttcatgtgacctt |
4590212 |
T |
|
| Q |
679 |
ttccttcctcttat |
692 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
4590211 |
ttccatcctcttat |
4590198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 706
Target Start/End: Complemental strand, 4590163 - 4590031
Alignment:
| Q |
574 |
agtgtcaaagaacaggtaatatctcaaaaagaaatgaggtgcccttaaatggtgttttagaaattgaaccctttgattgttggggaatcgatttcatggg |
673 |
Q |
| |
|
|||| ||||||||| |||||||||| || || |||| | || ||| ||||| |||||||||||||||| ||||| |||||||| || || ||||| || |
|
|
| T |
4590163 |
agtgccaaagaacatgtaatatctctaagaggaatgcgatgtcctataatggaattttagaaattgaaccttttgactgttggggcattgacttcatagg |
4590064 |
T |
|
| Q |
674 |
accatttccttcctcttattctcacttgtatat |
706 |
Q |
| |
|
||| || | |||||||||||||| ||||||| |
|
|
| T |
4590063 |
acctttctcatcctcttattctcatctgtatat |
4590031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 247 - 691
Target Start/End: Original strand, 23791 - 24235
Alignment:
| Q |
247 |
gagaaaggccatggtttgctgacatggctaactttaaggtcgggaatatgattcctgatgattt-gagctagcaggagaagaagaaattcttcaaggatg |
345 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||||||| ||| || || | |||||||| || ||| || || ||| ||| || || |||||||||| |
|
|
| T |
23791 |
gagaaagaccttggtttgctgacatggcgaactttaaggccggtaacatagtgcctgatgacttagag-tatcataagaggaaaaagtttttcaaggatg |
23889 |
T |
|
| Q |
346 |
caaaccactacttgtgggatgatccttacttatttaaggtaagcactgacgggttaataagacgttgtgttgcaggagaggaagctaagagcataatgtg |
445 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||| |||||| | || || ||||||||||||||||| ||||||||| | || || ||||| |
|
|
| T |
23890 |
caaaccactatgtgtgggatgatccttatctatttaaggtaaaaactgacagattgatgagacgttgtgttgcaggtgaggaagctcatagtatcatgtg |
23989 |
T |
|
| Q |
446 |
gcactgccataactcagcttatgaaggccaccacagtggtgaaagaacagccgccaaaattctacagagtgggttctggtggcccacactcttcaaggat |
545 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| ||||| |||||||||||||| || | | || ||||| |||||||||||||| || ||||||||| |
|
|
| T |
23990 |
gcactgccatagctcagcttatggaggccaccatagtggagaaagaacagccgcgaaggtgttgcaaagtggattctggtggcccacccttttcaaggat |
24089 |
T |
|
| Q |
546 |
tgccatgaatttgtccgacactgtgacaagtgtcaaagaacaggtaatatctcaaaaagaaatgaggtgcccttaaatggtgttttagaaattgaaccct |
645 |
Q |
| |
|
||||| || ||||| || |||||||| || |||| ||||||| ||| || || || |||||| ||||| ||| || | | ||| ||||||| | |
|
|
| T |
24090 |
tgccacgactttgttgcacggtgtgacaaatgccaaatgacaggtagtatttctaagaggaatgagatgcccctaacaggaatcattgaagttgaaccat |
24189 |
T |
|
| Q |
646 |
ttgattgttggggaatcgatttcatgggaccatttccttcctctta |
691 |
Q |
| |
|
||||||||||||| || || || |||||||| || ||||||||||| |
|
|
| T |
24190 |
ttgattgttggggcattgactttatgggaccgttcccttcctctta |
24235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0126 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 247 - 691
Target Start/End: Complemental strand, 9709 - 9265
Alignment:
| Q |
247 |
gagaaaggccatggtttgctgacatggctaactttaaggtcgggaatatgattcctgatgattt-gagctagcaggagaagaagaaattcttcaaggatg |
345 |
Q |
| |
|
|||||||||| |||||||||||||| || |||||||||| ||| || || | |||||||| | ||| || || ||| ||| || |||||| |||||| |
|
|
| T |
9709 |
gagaaaggccttggtttgctgacatagcgaactttaaggccggtaacatagtgcctgatgaactagag-tatcatcagaggaaaaatttcttcgaggatg |
9611 |
T |
|
| Q |
346 |
caaaccactacttgtgggatgatccttacttatttaaggtaagcactgacgggttaataagacgttgtgttgcaggagaggaagctaagagcataatgtg |
445 |
Q |
| |
|
|||||||||| |||||||||||||||| | ||||||||||||||||||||||| || ||| ||||||||||||| ||||||||| | || || | ||| |
|
|
| T |
9610 |
caaaccactatgtgtgggatgatccttatctgtttaaggtaagcactgacgggttgattagatgttgtgttgcaggtgaggaagcttatagtatcacgtg |
9511 |
T |
|
| Q |
446 |
gcactgccataactcagcttatgaaggccaccacagtggtgaaagaacagccgccaaaattctacagagtgggttctggtggcccacactcttcaaggat |
545 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||| | ||||||||||| || | | || ||||| |||||||||||||| || ||||||||| |
|
|
| T |
9510 |
acactgccataactcagcttatgggggccaccatagtggaaagagaacagccgctaaggtattgcaaagtggattctggtggcccacccttttcaaggat |
9411 |
T |
|
| Q |
546 |
tgccatgaatttgtccgacactgtgacaagtgtcaaagaacaggtaatatctcaaaaagaaatgaggtgcccttaaatggtgttttagaaattgaaccct |
645 |
Q |
| |
|
||||| || ||||| || |||||||| || ||||| |||||||| || || || || |||||| ||||| ||| || | | ||| ||||||| | |
|
|
| T |
9410 |
tgccacgactttgttgcacggtgtgacaaatgccaaaggacaggtaacatttctaagaggaatgagatgcccctaacaggaatcattgaagttgaaccat |
9311 |
T |
|
| Q |
646 |
ttgattgttggggaatcgatttcatgggaccatttccttcctctta |
691 |
Q |
| |
|
||||||||||||| || || || |||||||||||||| ||||||| |
|
|
| T |
9310 |
ttgattgttggggcattgactttatgggaccatttcccccctctta |
9265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 247 - 559
Target Start/End: Complemental strand, 16381338 - 16381026
Alignment:
| Q |
247 |
gagaaaggccatggtttgctgacatggctaactttaaggtcgggaatatgattcctgatgat-ttgagctagcaggagaagaagaaattcttcaaggatg |
345 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| || ||||| |||||||||| ||||| || || ||| ||| || ||||||||||||| |
|
|
| T |
16381338 |
gagaaaggccatggtttgctgacatggcgaactttaaggccgataatatagttcctgatgaccttgag-tatcaatagaggaaaaagttcttcaaggatg |
16381240 |
T |
|
| Q |
346 |
caaaccactacttgtgggatgatccttacttatttaaggtaagcactgacgggttaataagacgttgtgttgcaggagaggaagctaagagcataatgtg |
445 |
Q |
| |
|
|||||||||| ||| ||||||||||| | ||||||||||||||| |||| || || |||||||||||| |||| ||||| ||||| || || ||||| |
|
|
| T |
16381239 |
caaaccactatctgtaggatgatccttctctgtttaaggtaagcactaacggtttgattagacgttgtgtttcaggtgaggaggctaacagtatcatgtg |
16381140 |
T |
|
| Q |
446 |
gcactgccataactcagcttatgaaggccaccacagtggtgaaagaacagccgccaaaattctacagagtgggttctggtggcccacactcttcaaggat |
545 |
Q |
| |
|
|||||| || | |||| |||||| || ||||| ||||| || ||||| || || ||| || || | ||||| |||||||| ||||| || ||||||||| |
|
|
| T |
16381139 |
gcactggcaaagctcaacttatggtggtcaccatagtggagatagaaccgctgcaaaagttttaaaaagtggcttctggtgtcccacccttttcaaggat |
16381040 |
T |
|
| Q |
546 |
tgccatgaatttgt |
559 |
Q |
| |
|
||||| || ||||| |
|
|
| T |
16381039 |
tgccaagactttgt |
16381026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 189 - 676
Target Start/End: Original strand, 14706573 - 14707059
Alignment:
| Q |
189 |
acaaacaaagagggggccataatggctgagttcccagatgaacaactgttcaacgtgagagaaaggccatggtttgctgacatggctaactttaaggtcg |
288 |
Q |
| |
|
||||| ||||| |||||||| |||||||| || ||||||||||||||||| | | ||||||| || | |||||| |||||||| || || ||||||| |
|
|
| T |
14706573 |
acaaagaaagaaggggccatcatggctgaatttccagatgaacaactgtttgccataggagaaagaccttagtttgccgacatggccaatttcaaggtcg |
14706672 |
T |
|
| Q |
289 |
ggaatatgattcctgatgatttgagctagcaggagaagaagaaattcttcaaggatgcaaaccactacttgtgggatgatccttacttatttaaggtaag |
388 |
Q |
| |
|
|||| || |||| |||||| || ||||| | | ||| | || |||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
14706673 |
ggaacataattcttgatgacatggagtagcatcaaaggaaagagtttttcaaggatgcaaaccactatttgtgggatgatccttatctatttaaggtaag |
14706772 |
T |
|
| Q |
389 |
cactgacgggttaataagacgttgtgttgcaggagaggaagctaagagcataatgtggcactgccataactcagcttatgaaggccaccacagtggtgaa |
488 |
Q |
| |
|
||||| | | || || |||| || ||||||||| || || || | ||| ||||||| ||||||| ||||||||||| |||||||| || || ||| |
|
|
| T |
14706773 |
cactg-cagtttgattagaccttttgttgcaggtgaagagatcaaaaacattgtgtggcattgccatagctcagcttatgggggccaccatagcggcgaa |
14706871 |
T |
|
| Q |
489 |
agaacagccgccaaaattctacagagtgggttctggtggcccacactcttcaaggattgccatgaatttgtccgacactgtgacaagtgtcaaagaacag |
588 |
Q |
| |
|
||||| || || ||| | |||| || || ||||||||||| || || |||||||| |||||||| ||||| | | |||||||| || |||||||||| |
|
|
| T |
14706872 |
agaaccgctgcgaaagtcttacaaagcggtttctggtggcctactcttttcaaggactgccatgattttgtgaggcggtgtgacaattgccaaagaacag |
14706971 |
T |
|
| Q |
589 |
gtaatatctcaaaaagaaatgaggtgcccttaaatggtgttttagaaattgaaccctttgattgttggggaatcgatttcatgggacc |
676 |
Q |
| |
|
||| ||| || || || |||||| ||||| ||| || | | ||| ||||||| ||||| |||||||| || ||||| |||||||| |
|
|
| T |
14706972 |
gtagtatttctaagaggaatgagatgcccctaacgggaatcattgaagttgaaccatttgactgttggggcattgattttatgggacc |
14707059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 633 - 687
Target Start/End: Complemental strand, 16380953 - 16380899
Alignment:
| Q |
633 |
gaaattgaaccctttgattgttggggaatcgatttcatgggaccatttccttcct |
687 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||| ||||||||||| ||||||| |
|
|
| T |
16380953 |
gaaattgaaccatttgattgttggggcattgattttatgggaccattcccttcct |
16380899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 6e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 189 - 690
Target Start/End: Original strand, 24439674 - 24440175
Alignment:
| Q |
189 |
acaaacaaagagggggccataatggctgagttcccagatgaacaactgttcaacgtgagagaaaggccatggtttgctgacatggctaactttaaggtcg |
288 |
Q |
| |
|
||||| ||||| |||||||| |||||||| || || ||||| || ||||| | |||||||| || |||||||| |||||||| || || |||| || |
|
|
| T |
24439674 |
acaaagaaagaaggggccatcatggctgaatttccggatgagcagctgtttgcaataagagaaagaccttggtttgccgacatggcaaatttcaaggccg |
24439773 |
T |
|
| Q |
289 |
ggaatatgattcctgatgatttg-agctagcaggagaagaagaaattcttcaaggatgcaaaccactacttgtgggatgatccttacttatttaaggtaa |
387 |
Q |
| |
|
|||| || ||||||||||| || ||| |||| | | ||| || || |||||||||||||||||||| ||||||||||||||||| | || ||||||| |
|
|
| T |
24439774 |
ggaacataattcctgatgacatggagc-agcatcaaaggaaaaagtttttcaaggatgcaaaccactatttgtgggatgatccttatctgttcaaggtaa |
24439872 |
T |
|
| Q |
388 |
gcactgacgggttaataagacgttgtgttgcaggagaggaagctaagagcataatgtggcactgccataactcagcttatgaaggccaccacagtggtga |
487 |
Q |
| |
|
|||||||||| || || |||||||||||||||| || |||| || | ||| ||||||| ||||||| ||||||||||| |||||||| || || || |
|
|
| T |
24439873 |
gcactgacggtttgattcgacgttgtgttgcaggtgaagaagtcaaaaacattgtgtggcattgccatagctcagcttatgggggccaccatagcggcga |
24439972 |
T |
|
| Q |
488 |
aagaacagccgccaaaattctacagagtgggttctggtggcccacactcttcaaggattgccatgaatttgtccgacactgtgacaagtgtcaaagaaca |
587 |
Q |
| |
|
| |||| || || ||| | | || || || ||||||||||| || || ||||||||||||||||| ||||| | | |||||||| || ||||||||| |
|
|
| T |
24439973 |
acgaaccgctgcgaaagtcttgcaaagcggtttctggtggcctactcttttcaaggattgccatgattttgtgaggcggtgtgacaattgccaaagaaca |
24440072 |
T |
|
| Q |
588 |
ggtaatatctcaaaaagaaatgaggtgcccttaaatggtgttttagaaattgaaccctttgattgttggggaatcgatttcatgggaccatttccttcct |
687 |
Q |
| |
|
|||| ||| || || || |||||| ||||| ||| || | | ||| ||||||| ||||| |||||||| || ||||| |||||||| || ||| ||| |
|
|
| T |
24440073 |
ggtagtatttctaagaggaatgagatgcccctaacgggaatcattgaagttgaaccatttgactgttggggcattgattttatgggacctttccctccct |
24440172 |
T |
|
| Q |
688 |
ctt |
690 |
Q |
| |
|
||| |
|
|
| T |
24440173 |
ctt |
24440175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 4e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 189 - 695
Target Start/End: Original strand, 20973819 - 20974325
Alignment:
| Q |
189 |
acaaacaaagagggggccataatggctgagttcccagatgaacaactgttcaacgtgagagaaaggccatggtttgctgacatggctaactttaaggtcg |
288 |
Q |
| |
|
||||| ||||| |||||||| |||||||| || ||||||||||| ||||| | ||||||| || |||||||| |||||||| || || |||| || |
|
|
| T |
20973819 |
acaaagaaagaaggggccatcatggctgaatttccagatgaacagctgtttgctataggagaaagaccttggtttgccgacatggccaatttcaaggccg |
20973918 |
T |
|
| Q |
289 |
ggaatatgattcctgatgatttg-agctagcaggagaagaagaaattcttcaaggatgcaaaccactacttgtgggatgatccttacttatttaaggtaa |
387 |
Q |
| |
|
|||| || ||||||||||| || ||| |||| | | ||| || || |||||||||||||||||||| || |||||||||||||| | |||||||||| |
|
|
| T |
20973919 |
ggaacataattcctgatgacatggagc-agcatcaaaggaaaaagtttttcaaggatgcaaaccactatttatgggatgatccttatatgtttaaggtaa |
20974017 |
T |
|
| Q |
388 |
gcactgacgggttaataagacgttgtgttgcaggagaggaagctaagagcataatgtggcactgccataactcagcttatgaaggccaccacagtggtga |
487 |
Q |
| |
|
|||||||||| || || ||||||||||||||||| || || || | ||| ||||||| ||||||| |||| |||||| || ||||| || || || |
|
|
| T |
20974018 |
gcactgacggtttgattagacgttgtgttgcaggtgaagagatcaaaaacattttgtggcattgccatagctcaacttatgggggacaccatagcggcga |
20974117 |
T |
|
| Q |
488 |
aagaacagccgccaaaattctacagagtgggttctggtggcccacactcttcaaggattgccatgaatttgtccgacactgtgacaagtgtcaaagaaca |
587 |
Q |
| |
|
|||||| || || ||| | | || || || ||||||||||| || || |||||||| |||||||| ||||| | | |||||||| || ||||||||| |
|
|
| T |
20974118 |
aagaaccgctgcaaaagtcttgcaaagcggtttctggtggcctactcttttcaaggactgccatgattttgtaaggcggtgtgacaattgccaaagaaca |
20974217 |
T |
|
| Q |
588 |
ggtaatatctcaaaaagaaatgaggtgcccttaaatggtgttttagaaattgaaccctttgattgttggggaatcgatttcatgggaccatttccttcct |
687 |
Q |
| |
|
|||| ||| || || || |||||| ||||| ||| || | | ||| ||||||| ||||| |||||||| || ||||| |||||||| || ||| ||| |
|
|
| T |
20974218 |
ggtagtatttctaagaggaatgagatgcccctaacgggaatcattgaagttgaaccttttgactgttggggcattgattttatgggaccgttccctccct |
20974317 |
T |
|
| Q |
688 |
cttattct |
695 |
Q |
| |
|
|||||||| |
|
|
| T |
20974318 |
cttattct |
20974325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 336 - 690
Target Start/End: Complemental strand, 16844187 - 16843833
Alignment:
| Q |
336 |
ttcaaggatgcaaaccactacttgtgggatgatccttacttatttaaggtaagcactgacgggttaataagacgttgtgttgcaggagaggaagctaaga |
435 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| | || ||||||||||||||||| || || ||||||||||||||||| || || || | |
|
|
| T |
16844187 |
ttcaaggatgcaaaccactatttgtgggatgatccttatctgttcaaggtaagcactgacggtttgattagacgttgtgttgcaggtgaagagatcaaaa |
16844088 |
T |
|
| Q |
436 |
gcataatgtggcactgccataactcagcttatgaaggccaccacagtggtgaaagaacagccgccaaaattctacagagtgggttctggtggcccacact |
535 |
Q |
| |
|
||| ||||||| ||||||| ||||||||||| |||||||| || || ||| |||| || || ||| | | || || |||||||||||||| || || |
|
|
| T |
16844087 |
acattgtgtggcattgccatagctcagcttatgggggccaccatagcggcgaacgaaccgctgcgaaagtcttgcaaagcgggttctggtggcctactct |
16843988 |
T |
|
| Q |
536 |
cttcaaggattgccatgaatttgtccgacactgtgacaagtgtcaaagaacaggtaatatctcaaaaagaaatgaggtgcccttaaatggtgttttagaa |
635 |
Q |
| |
|
||||||||||||||||| ||||| | | |||||||| || ||||||||||||| ||| || || || |||||| ||||| ||| || | | ||| |
|
|
| T |
16843987 |
tttcaaggattgccatgattttgtgaggcggtgtgacaattgccaaagaacaggtagtatttctaagaggaatgagatgcccctaacgggaatcattgaa |
16843888 |
T |
|
| Q |
636 |
attgaaccctttgattgttggggaatcgatttcatgggaccatttccttcctctt |
690 |
Q |
| |
|
||||||| ||||| |||||||| || ||||| |||||||| || ||| |||||| |
|
|
| T |
16843887 |
gttgaaccatttgactgttggggcattgattttatgggacccttccctccctctt |
16843833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 333 - 691
Target Start/End: Original strand, 57632 - 57990
Alignment:
| Q |
333 |
ttcttcaaggatgcaaaccactacttgtgggatgatccttacttatttaaggtaagcactgacgggttaataagacgttgtgttgcaggagaggaagcta |
432 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||| | ||||||||||||||||||| || |||||||||||||||||||| ||||| |||| |
|
|
| T |
57632 |
ttcttcaacgatgcaaaccactatatgtgggatgatccttatctgtttaaggtaagcactgacgatttgataagacgttgtgttgcaggtgaggacgcta |
57731 |
T |
|
| Q |
433 |
agagcataatgtggcactgccataactcagcttatgaaggccaccacagtggtgaaagaacagccgccaaaattctacagagtgggttctggtggcccac |
532 |
Q |
| |
|
| || || ||||||| |||||||| ||||||||||| | |||||| ||||| || | ||| || | ||| || | | |||| ||||||||||| || |
|
|
| T |
57732 |
acagtatcatgtggccctgccatagctcagcttatggggcccaccatagtggagatacaaccgctacaaaagttttgccaagtgttttctggtggccaac |
57831 |
T |
|
| Q |
533 |
actcttcaaggattgccatgaatttgtccgacactgtgacaagtgtcaaagaacaggtaatatctcaaaaagaaatgaggtgcccttaaatggtgtttta |
632 |
Q |
| |
|
|| ||||||||||| || |||||||| | | ||||| || | ||||| ||| |||| || || || || |||||| ||||||||| || | | |
|
|
| T |
57832 |
ccttttcaaggattgtcaagaatttgttcagcggtgtgataaaggccaaaggacaagtaacatttctaagaggaatgagatgcccttaacaggaatcatt |
57931 |
T |
|
| Q |
633 |
gaaattgaaccctttgattgttggggaatcgatttcatgggaccatttccttcctctta |
691 |
Q |
| |
|
|||||| ||||||||||||||||||| || |||| |||||||| || ||||||||||| |
|
|
| T |
57932 |
gaaatttaaccctttgattgttggggcatttattttatgggaccgttcccttcctctta |
57990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 9e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 247 - 493
Target Start/End: Original strand, 27157680 - 27157926
Alignment:
| Q |
247 |
gagaaaggccatggtttgctgacatggctaactttaaggtcgggaatatgattcctgatgatttgagctagcaggagaagaagaaattcttcaaggatgc |
346 |
Q |
| |
|
|||||||| ||||||||| || ||||| |||||||||| |||||| ||||||| |||||| || || ||| ||| ||| || |||| |||||||| |
|
|
| T |
27157680 |
gagaaaggtcatggtttgtcgatatggccaactttaaggccgggaacttgattcccgatgatctggactggcaatagaggaataagctctttaaggatgc |
27157779 |
T |
|
| Q |
347 |
aaaccactacttgtgggatgatccttacttatttaaggtaagcactgacgggttaataagacgttgtgttgcaggagaggaagctaagagcataatgtgg |
446 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||| || || |||||||||||||| | ||||| || || | ||||||||| |
|
|
| T |
27157780 |
caaccactacttatgggatgatcctgttccatttaaggtaagcactgacaatttgattagacgttgtgttgcgagtgaggaggccaaaaatataatgtgg |
27157879 |
T |
|
| Q |
447 |
cactgccataactcagcttatgaaggccaccacagtggtgaaagaac |
493 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
27157880 |
cacttccataactcagcttatgggggccaccatagtggtgaaagaac |
27157926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 411 - 598
Target Start/End: Complemental strand, 29443993 - 29443806
Alignment:
| Q |
411 |
tgtgttgcaggagaggaagctaagagcataatgtggcactgccataactcagcttatgaaggccaccacagtggtgaaagaacagccgccaaaattctac |
510 |
Q |
| |
|
||||||||||| || |||| || ||||| |||||||||||||||| |||| | |||| ||||||||||| |||||||| || || ||||||||| | | |
|
|
| T |
29443993 |
tgtgttgcaggtgatgaagtgaaaagcattatgtggcactgccatagctcatcatatggaggccaccacaacggtgaaaggaccgcagccaaaattttgc |
29443894 |
T |
|
| Q |
511 |
agagtgggttctggtggcccacactcttcaaggattgccatgaatttgtccgacactgtgacaagtgtcaaagaacaggtaatatctc |
598 |
Q |
| |
|
| ||||||||||||||||| || | || ||||||||||| || || ||| ||||||| |||||||||||||| |||||||| ||||| |
|
|
| T |
29443893 |
aaagtgggttctggtggccaaccttgtttaaggattgccaagagttcgtcagacactgcgacaagtgtcaaaggacaggtaacatctc |
29443806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 336 - 559
Target Start/End: Complemental strand, 26310 - 26087
Alignment:
| Q |
336 |
ttcaaggatgcaaaccactacttgtgggatgatccttacttatttaaggtaagcactgacgggttaataagacgttgtgttgcaggagaggaagctaaga |
435 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| | |||||||||||||||||| | || || ||||||||||||||||| || || || | |
|
|
| T |
26310 |
ttcaaggatgcaaaccactatttatgggatgatccttatctgtttaaggtaagcactgacagtttgattagacgttgtgttgcaggtgaagagatcaaaa |
26211 |
T |
|
| Q |
436 |
gcataatgtggcactgccataactcagcttatgaaggccaccacagtggtgaaagaacagccgccaaaattctacagagtgggttctggtggcccacact |
535 |
Q |
| |
|
||| ||||||| ||||||| ||||||||||| |||||||| || ||||||||||| || || ||| | | || || || ||||||||||| || || |
|
|
| T |
26210 |
acattgtgtggcattgccatagctcagcttatgggggccaccatagcggtgaaagaaccgctgcaaaagtcttgcaaagcggtttctggtggcctactct |
26111 |
T |
|
| Q |
536 |
cttcaaggattgccatgaatttgt |
559 |
Q |
| |
|
|||||||| |||||||| ||||| |
|
|
| T |
26110 |
tttcaaggactgccatgattttgt |
26087 |
T |
|
Back To:
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