View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1078_low_11 (Length: 426)
Name: NF1078_low_11
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1078_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 231 - 418
Target Start/End: Original strand, 48052070 - 48052257
Alignment:
| Q |
231 |
gaattacggaattaattatacacactttccagtttccaacacataaaaaagaaaaggttatacttcaagtatttgcttgaactaagacggtaaattctag |
330 |
Q |
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| T |
48052070 |
gaattacggaattaattatacacactttccagtttccaacacataaaaaagaaaaggttatatttcaagtatttgcttgaactaagacggtaaattctag |
48052169 |
T |
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| Q |
331 |
cttccactgtcttgtctcaacatgcacatgcatagcatagcaggacttcatcaggttagttattcatcattttctcacaatattattc |
418 |
Q |
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| T |
48052170 |
cttccactgtcttgtctcaacatgcacatgcatagcatagcaggacttcatcaggttagttattcatcattttctcacaatattattc |
48052257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 30 - 147
Target Start/End: Original strand, 48051870 - 48051985
Alignment:
| Q |
30 |
ccatcactcttttattcattttatttgctggaaaataacatggcagtgtgccacatcagcacatagagggagatagatcatgctaatttacgtagatatg |
129 |
Q |
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| T |
48051870 |
ccatcactcttttattcattttatttgctggaaaataacatggcagtgtgccacatcagcatatagagggagatagatcatgctaatttacgt--acatg |
48051967 |
T |
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| Q |
130 |
tggttaacctcgttaatg |
147 |
Q |
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| T |
48051968 |
tggttaacctcgttaatg |
48051985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 48044175 - 48044263
Alignment:
| Q |
30 |
ccatcactcttttattcattttatttgctggaaaataacatggcagtgtgccacatcagcacatagagggagatagatcatgctaattt |
118 |
Q |
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| T |
48044175 |
ccatcactcttttattcattttatttgctggtaaataacatggcaaaatgccacatcaacatagagagggagataggtcacgcttattt |
48044263 |
T |
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