View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1078_low_12 (Length: 406)
Name: NF1078_low_12
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1078_low_12 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 97 - 406
Target Start/End: Complemental strand, 10178416 - 10178106
Alignment:
| Q |
97 |
aaaatgtggggaacaaaagtacaagcaaacttaaaatatatgtatctgatttcttttggtttgattcaattttgaaaaaggaatctaaaatttgatctca |
196 |
Q |
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| T |
10178416 |
aaaatgtggggaacaaaagtacaatcaaacttaaaatatatgtatccgatttcttttggtttgattcaattttgaaaaaggaatctaaaatttgatctca |
10178317 |
T |
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| Q |
197 |
atgatcagtttcaattcctgtcaattgtcatgcttatatgttgttggatttgctactagttgctaacatggacttcagaaaatcataataaagttggatg |
296 |
Q |
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| T |
10178316 |
atgatcaatttcaattcctgtcaattgtcatgcttatatgttgttggatttgctactagttgctaacatggacttcagaaaatcataataaagttggatg |
10178217 |
T |
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| Q |
297 |
aac--aagaacaactactactatatagatttgtaattatgttgacaatttctctccatttgaatatttgaacagaatttgtgaactacaaaggatgctta |
394 |
Q |
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| T |
10178216 |
aacaaaagaacaactacta-tatagaaatttgtaattatgttgacaatttctctccatttgaatatttgaacagaatttgtgaactacaaaggatgctta |
10178118 |
T |
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| Q |
395 |
atcaaataagca |
406 |
Q |
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| T |
10178117 |
atcaaataagca |
10178106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 10281642 - 10281705
Alignment:
| Q |
279 |
tcataataaagttggatgaacaagaacaactactactatatagatttgtaattatgttgacaat |
342 |
Q |
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| T |
10281642 |
tcataacaaagttggatggatgagaacaactactactatagaaattcataattatgttgacaat |
10281705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 2043064 - 2043021
Alignment:
| Q |
145 |
atttcttttggtttgattcaattttgaaaaaggaatctaaaatt |
188 |
Q |
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| T |
2043064 |
atttcatttggtttgattcagttttgaaaaaggaatccaaaatt |
2043021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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