View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1078_low_15 (Length: 371)

Name: NF1078_low_15
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1078_low_15
NF1078_low_15
[»] chr1 (7 HSPs)
chr1 (148-352)||(39625101-39625304)
chr1 (148-234)||(22911092-22911177)
chr1 (299-352)||(13788155-13788208)
chr1 (299-352)||(25805934-25805987)
chr1 (255-348)||(22910968-22911059)
chr1 (195-234)||(13787845-13787884)
chr1 (195-234)||(25806258-25806297)
[»] chr6 (3 HSPs)
chr6 (148-352)||(18884211-18884413)
chr6 (299-352)||(13431616-13431669)
chr6 (195-234)||(13431940-13431979)
[»] chr4 (12 HSPs)
chr4 (148-234)||(34736234-34736318)
chr4 (255-352)||(53828994-53829088)
chr4 (286-352)||(21631078-21631144)
chr4 (286-352)||(21804654-21804720)
chr4 (299-352)||(2503165-2503218)
chr4 (300-352)||(46094299-46094351)
chr4 (195-234)||(2503488-2503527)
chr4 (195-234)||(46093927-46093966)
chr4 (180-232)||(53829122-53829172)
chr4 (148-210)||(21631239-21631300)
chr4 (150-210)||(21804500-21804559)
chr4 (201-234)||(21804560-21804593)
[»] chr2 (6 HSPs)
chr2 (152-231)||(43565766-43565844)
chr2 (152-234)||(29456975-29457056)
chr2 (299-352)||(7572254-7572307)
chr2 (299-352)||(16666849-16666902)
chr2 (195-234)||(7572578-7572617)
chr2 (195-234)||(16667173-16667212)
[»] chr5 (4 HSPs)
chr5 (148-234)||(37300362-37300447)
chr5 (300-352)||(36993042-36993094)
chr5 (195-234)||(36992670-36992709)
chr5 (255-352)||(37300237-37300330)
[»] chr3 (5 HSPs)
chr3 (148-352)||(35872002-35872209)
chr3 (282-352)||(48268042-48268112)
chr3 (148-234)||(48267904-48267986)
chr3 (299-352)||(52351652-52351705)
chr3 (195-234)||(52351342-52351381)
[»] chr8 (8 HSPs)
chr8 (286-352)||(4140047-4140113)
chr8 (152-234)||(917399-917480)
chr8 (296-352)||(10188142-10188198)
chr8 (299-352)||(28844848-28844901)
chr8 (148-210)||(10187976-10188037)
chr8 (195-234)||(28844537-28844576)
chr8 (201-234)||(4139953-4139986)
chr8 (314-352)||(5368960-5368998)
[»] chr7 (7 HSPs)
chr7 (148-234)||(47232234-47232315)
chr7 (282-352)||(47232107-47232177)
chr7 (299-352)||(25417738-25417791)
chr7 (300-352)||(5766584-5766636)
chr7 (195-234)||(5766974-5767013)
chr7 (195-234)||(25418062-25418101)
chr7 (299-352)||(39065329-39065382)


Alignment Details
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 148 - 352
Target Start/End: Original strand, 39625101 - 39625304
Alignment:
Q  148 tgttgggaatgattttttggagtgtcgtgttggattagaggaggatctgtgaggtaattatgtagcgtataattgatgagttgtaa--aaatgatttcgg 245  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  39625101 tgttgggaatgattttttggagtgccgtgttggattagaggaggatctgtgaggtaattatgtagcgtataattgatgagttgtaaacaaatgatttcgg 39625200  T
Q  246 gaaaagaagataagttgtgggaaaagaatatacaaagaagattatgaactatattaaataaactattgttttttacttgaattatttgaaatacaatgta 345  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39625201 gaaaagaagataagttgtgggaaaagaatatac---gaagattatgaactatattaaataaactattgatttttacttgaattatttgaaatacaatgta 39625297  T
Q  346 aatcaag 352  Q
    |||||||    
T  39625298 aatcaag 39625304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 22911177 - 22911092
Alignment:
Q  148 tgttgggaatgatttttt-ggagtgtcgtgttggattagaggaggatctgtgaggtaattatgtagcgtataattgatgagttgtaaa 234  Q
    |||||||||||||||||| ||||||  |||||||||||| |||||||  | |||||||||||||||||||||||||||||||||||||    
T  22911177 tgttgggaatgatttttttggagtgcagtgttggattagtggaggat--gcgaggtaattatgtagcgtataattgatgagttgtaaa 22911092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 13788155 - 13788208
Alignment:
Q  299 ttaaataaactattgttttttacttgaattatttgaaatacaatgtaaatcaag 352  Q
    ||||||||| |||| |||||||||||||  ||||||||||||||||||||||||    
T  13788155 ttaaataaattattattttttacttgaaccatttgaaatacaatgtaaatcaag 13788208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 25805987 - 25805934
Alignment:
Q  299 ttaaataaactattgttttttacttgaattatttgaaatacaatgtaaatcaag 352  Q
    ||||||||| |||| |||||||||||||  ||||||||||||||||||||||||    
T  25805987 ttaaataaattattattttttacttgaaccatttgaaatacaatgtaaatcaag 25805934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 255 - 348
Target Start/End: Complemental strand, 22911059 - 22910968
Alignment:
Q  255 ataagttgtgggaaaagaatatacaaagaagattatgaactatattaaataaactattgtt-ttttacttgaattatttgaaatacaatgtaaat 348  Q
    ||||||| |||||||||||||||    |||||||| |||| |||||||||||| |||| || |||||||||||  |||| |||||||||||||||    
T  22911059 ataagttatgggaaaagaatatat---gaagattaggaaccatattaaataaattattattattttacttgaaccatttaaaatacaatgtaaat 22910968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 13787845 - 13787884
Alignment:
Q  195 tgtgaggtaattatgtagcgtataattgatgagttgtaaa 234  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  13787845 tgtgaggtaatcatgtagcgtataattgatgagttgtaaa 13787884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 25806297 - 25806258
Alignment:
Q  195 tgtgaggtaattatgtagcgtataattgatgagttgtaaa 234  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  25806297 tgtgaggtaatcatgtagcgtataattgatgagttgtaaa 25806258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 168; Significance: 6e-90; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 148 - 352
Target Start/End: Original strand, 18884211 - 18884413
Alignment:
Q  148 tgttgggaatgattttttggagtgtcgtgttggattagaggaggatctgtgaggtaattatgtagcgtataattgatgagttgtaa-aaatgatttcggg 246  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||| |||    
T  18884211 tgttgggaatgattttttggagtgccgtgttggattagaggaggatctgtgaggtaattatgtagcgtataattgatgagtttaaacaaatgattttggg 18884310  T
Q  247 aaaagaagataagttgtgggaaaagaatatacaaagaagattatgaactatattaaataaactattgttttttacttgaattatttgaaatacaatgtaa 346  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18884311 aaaagaagataagttgtgggaaaagaatatac---gaagattatgaactatattaaataaactattgttttttacttgaattatttgaaatacaatgtaa 18884407  T
Q  347 atcaag 352  Q
    ||||||    
T  18884408 atcaag 18884413  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 13431669 - 13431616
Alignment:
Q  299 ttaaataaactattgttttttacttgaattatttgaaatacaatgtaaatcaag 352  Q
    ||||||||| |||| |||||||||||||  ||||||||||||||||||||||||    
T  13431669 ttaaataaattattattttttacttgaaccatttgaaatacaatgtaaatcaag 13431616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 13431979 - 13431940
Alignment:
Q  195 tgtgaggtaattatgtagcgtataattgatgagttgtaaa 234  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  13431979 tgtgaggtaatcatgtagcgtataattgatgagttgtaaa 13431940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 34736318 - 34736234
Alignment:
Q  148 tgttgggaatgattttttggagtgtcgtgttggattagaggaggatctgtgaggtaattatgtagcgtataattgatgagttgtaaa 234  Q
    ||||||||||||||||||||||||  |||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||    
T  34736318 tgttgggaatgattttttggagtgcagtgttggattagaggagga--tgtgaggtaatcatgtagcgtataattgatgagttgtaaa 34736234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 255 - 352
Target Start/End: Complemental strand, 53829088 - 53828994
Alignment:
Q  255 ataagttgtgggaaaagaatatacaaagaagattatgaactatattaaataaactattgttttttacttgaattatttgaaatacaatgtaaatcaag 352  Q
    ||||||| ||||||||||||||     |||||||| |||| |||||||||||| |||| |||||||||||||  ||||||||||||||||||||||||    
T  53829088 ataagttatgggaaaagaatatgt---gaagattaggaaccatattaaataaattattattttttacttgaaccatttgaaatacaatgtaaatcaag 53828994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 286 - 352
Target Start/End: Complemental strand, 21631144 - 21631078
Alignment:
Q  286 attatgaactatattaaataaactattgttttttacttgaattatttgaaatacaatgtaaatcaag 352  Q
    |||| |||| |||||||||||| |||| |||||||||||||||||| |||||||||| |||||||||    
T  21631144 attaggaaccatattaaataaattattattttttacttgaattattcgaaatacaatttaaatcaag 21631078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 286 - 352
Target Start/End: Original strand, 21804654 - 21804720
Alignment:
Q  286 attatgaactatattaaataaactattgttttttacttgaattatttgaaatacaatgtaaatcaag 352  Q
    |||| |||| |||||||||||| |||| |||||||||||||||||| |||||||||| |||||||||    
T  21804654 attaggaaccatattaaataaattattattttttacttgaattattcgaaatacaatttaaatcaag 21804720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 2503218 - 2503165
Alignment:
Q  299 ttaaataaactattgttttttacttgaattatttgaaatacaatgtaaatcaag 352  Q
    ||||||||| |||| |||||||||||||  ||||||||||||||||||||||||    
T  2503218 ttaaataaattattattttttacttgaaccatttgaaatacaatgtaaatcaag 2503165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 300 - 352
Target Start/End: Original strand, 46094299 - 46094351
Alignment:
Q  300 taaataaactattgttttttacttgaattatttgaaatacaatgtaaatcaag 352  Q
    |||||||| |||| |||||||||||||  ||||||||||||||||||||||||    
T  46094299 taaataaattattattttttacttgaaccatttgaaatacaatgtaaatcaag 46094351  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 2503527 - 2503488
Alignment:
Q  195 tgtgaggtaattatgtagcgtataattgatgagttgtaaa 234  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  2503527 tgtgaggtaatcatgtagcgtataattgatgagttgtaaa 2503488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 46093927 - 46093966
Alignment:
Q  195 tgtgaggtaattatgtagcgtataattgatgagttgtaaa 234  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  46093927 tgtgaggtaatcatgtagcgtataattgatgagttgtaaa 46093966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 53829172 - 53829122
Alignment:
Q  180 gattagaggaggatctgtgaggtaattatgtagcgtataattgatgagttgta 232  Q
    ||||||||||||||  |||||||||| || |||||||||||||||||||||||    
T  53829172 gattagaggaggat--gtgaggtaatcatctagcgtataattgatgagttgta 53829122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 21631300 - 21631239
Alignment:
Q  148 tgttgggaatgatt-ttttggagtgtcgtgttggattagaggaggatctgtgaggtaattatgt 210  Q
    |||||||||||||| ||||||||||  |||||||||||||||||||  |||||||||| |||||    
T  21631300 tgttgggaatgattattttggagtgcagtgttggattagaggagga--tgtgaggtaactatgt 21631239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 21804500 - 21804559
Alignment:
Q  150 ttgggaatgatt-ttttggagtgtcgtgttggattagaggaggatctgtgaggtaattatgt 210  Q
    |||||||||||| ||||||||||   ||||||||||||||||||  ||||||||||||||||    
T  21804500 ttgggaatgattattttggagtgcattgttggattagaggagga--tgtgaggtaattatgt 21804559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 21804560 - 21804593
Alignment:
Q  201 gtaattatgtagcgtataattgatgagttgtaaa 234  Q
    |||||||| |||||||||||||||||||||||||    
T  21804560 gtaattatatagcgtataattgatgagttgtaaa 21804593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 43565766 - 43565844
Alignment:
Q  152 gggaatgatttttt-ggagtgtcgtgttggattagaggaggatctgtgaggtaattatgtagcgtataattgatgagttgt 231  Q
    |||||||||||||| ||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  43565766 gggaatgatttttttggagtgtagtgttggattagaggaggat--gtgaggtaattatgtagcgtataattgatgagttgt 43565844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 29456975 - 29457056
Alignment:
Q  152 gggaatgattttttg-gagtgtcgtgttggattagaggaggatctgtgaggtaattatgtagcgtataattgatgagttgtaaa 234  Q
    ||||||||||||||  |||||| ||||||||||| | ||||||  ||||| |||||||||||||||||||||||||||||||||    
T  29456975 gggaatgattttttttgagtgtagtgttggattaaaagaggat--gtgagataattatgtagcgtataattgatgagttgtaaa 29457056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 7572307 - 7572254
Alignment:
Q  299 ttaaataaactattgttttttacttgaattatttgaaatacaatgtaaatcaag 352  Q
    ||||||||| |||| |||||||||||||  ||||||||||||||||||||||||    
T  7572307 ttaaataaattattattttttacttgaaccatttgaaatacaatgtaaatcaag 7572254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 16666902 - 16666849
Alignment:
Q  299 ttaaataaactattgttttttacttgaattatttgaaatacaatgtaaatcaag 352  Q
    ||||||||| |||| |||||||||||||  ||||||||||||||||||||||||    
T  16666902 ttaaataaattattattttttacttgaaccatttgaaatacaatgtaaatcaag 16666849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 7572617 - 7572578
Alignment:
Q  195 tgtgaggtaattatgtagcgtataattgatgagttgtaaa 234  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  7572617 tgtgaggtaatcatgtagcgtataattgatgagttgtaaa 7572578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 16667212 - 16667173
Alignment:
Q  195 tgtgaggtaattatgtagcgtataattgatgagttgtaaa 234  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  16667212 tgtgaggtaatcatgtagcgtataattgatgagttgtaaa 16667173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 37300447 - 37300362
Alignment:
Q  148 tgttgggaatgatttttt-ggagtgtcgtgttggattagaggaggatctgtgaggtaattatgtagcgtataattgatgagttgtaaa 234  Q
    |||| ||||||||||||| ||||||  ||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||    
T  37300447 tgtttggaatgatttttttggagtgcagtgttggattagaggaggat--gtgaggtaatcatgtagcgtataattgatgagttgtaaa 37300362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 300 - 352
Target Start/End: Original strand, 36993042 - 36993094
Alignment:
Q  300 taaataaactattgttttttacttgaattatttgaaatacaatgtaaatcaag 352  Q
    |||||||| |||| |||||||||||||  ||||||||||||||||||||||||    
T  36993042 taaataaattattattttttacttgaaccatttgaaatacaatgtaaatcaag 36993094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 36992670 - 36992709
Alignment:
Q  195 tgtgaggtaattatgtagcgtataattgatgagttgtaaa 234  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  36992670 tgtgaggtaatcatgtagcgtataattgatgagttgtaaa 36992709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 352
Target Start/End: Complemental strand, 37300330 - 37300237
Alignment:
Q  255 ataagttgtgggaaaagaatatacaaagaagattatgaactatattaaataaactattgttttttacttgaattatttgaaatacaatgtaaatcaag 352  Q
    ||||||| ||||||||||||||     |||||||| |||  |||||||||||| |||| |||||||||||||  ||||| |||||||| |||||||||    
T  37300330 ataagttatgggaaaagaatatgt---gaagattaggaatcatattaaataaattattattttttacttgaaccatttg-aatacaatataaatcaag 37300237  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 352
Target Start/End: Original strand, 35872002 - 35872209
Alignment:
Q  148 tgttgggaatgatttttt-ggagtgtcgtgttggattagaggaggatctgtgaggtaattatgtagcgtataattgatgagttgtaaa--aatgatttcg 244  Q
    |||||||||||||||||| ||||||| |||    |||||||||||||  |||||||||| |||||| |||||||||||||||||||||  ||| ||||||    
T  35872002 tgttgggaatgatttttttggagtgtagtg----attagaggaggat--gtgaggtaatcatgtagtgtataattgatgagttgtaaacaaataatttcg 35872095  T
Q  245 gg---------aaaagaagataagttgtgggaaaagaatatacaaagaagattatgaactatattaaataaactattgttttttacttgaattatttgaa 335  Q
     |         || | |  ||||||| |||||||||||| |     ||||||||||||| |||||||||||| |||| |||||||||||||  |||||||    
T  35872096 aggtctattttaatatattataagttatgggaaaagaatttgt---gaagattatgaaccatattaaataaattattattttttacttgaaccatttgaa 35872192  T
Q  336 atacaatgtaaatcaag 352  Q
    |||||| ||||||||||    
T  35872193 atacaaggtaaatcaag 35872209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 48268042 - 48268112
Alignment:
Q  282 gaagattatgaactatattaaataaactattgttttttacttgaattatttgaaatacaatgtaaatcaag 352  Q
    |||||||| |||| | |||||||||| |||| |||||||||||||  ||||||||||||||||||||||||    
T  48268042 gaagattaggaaccacattaaataaattattattttttacttgaaccatttgaaatacaatgtaaatcaag 48268112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 234
Target Start/End: Original strand, 48267904 - 48267986
Alignment:
Q  148 tgttgggaatgatttttt-ggagtgtcgtgttggattagaggaggatctgtgaggtaattatgtagcgtataattgatgagttgtaaa 234  Q
    |||||||||||||||||| ||||||| ||| |   ||||||||||||  | |||||||| ||||||||||||||||||||||||||||    
T  48267904 tgttgggaatgatttttttggagtgtagtgat---ttagaggaggat--gcgaggtaatcatgtagcgtataattgatgagttgtaaa 48267986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 52351652 - 52351705
Alignment:
Q  299 ttaaataaactattgttttttacttgaattatttgaaatacaatgtaaatcaag 352  Q
    ||||||||| |||| |||||||||||||  ||||||||||||||||||||||||    
T  52351652 ttaaataaattattattttttacttgaaccatttgaaatacaatgtaaatcaag 52351705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 52351342 - 52351381
Alignment:
Q  195 tgtgaggtaattatgtagcgtataattgatgagttgtaaa 234  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  52351342 tgtgaggtaatcatgtagcgtataattgatgagttgtaaa 52351381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 286 - 352
Target Start/End: Original strand, 4140047 - 4140113
Alignment:
Q  286 attatgaactatattaaataaactattgttttttacttgaattatttgaaatacaatgtaaatcaag 352  Q
    |||| |||| |||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||    
T  4140047 attaggaaccatattaaataaattattattttttacttgaattatttgaaatacaatttaaatcaag 4140113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 917480 - 917399
Alignment:
Q  152 gggaatgatttttt-ggagtgtcgtgttggattagaggaggatctgtgaggtaattatgtagcgtataattgatgagttgtaaa 234  Q
    |||||||||||||| ||||||  || ||||||||||||| |||  ||||||||||||||||||||||| |||||||||||||||    
T  917480 gggaatgatttttttggagtgcagtattggattagaggatgat--gtgaggtaattatgtagcgtatagttgatgagttgtaaa 917399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 296 - 352
Target Start/End: Original strand, 10188142 - 10188198
Alignment:
Q  296 atattaaataaactattgttttttacttgaattatttgaaatacaatgtaaatcaag 352  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||    
T  10188142 atattaaataaattattattttttacttgaattatttgaaatacaatttaaatcaag 10188198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 28844848 - 28844901
Alignment:
Q  299 ttaaataaactattgttttttacttgaattatttgaaatacaatgtaaatcaag 352  Q
    ||||||||| |||| |||||||||||||  ||||||||||||||||||||||||    
T  28844848 ttaaataaattattattttttacttgaaccatttgaaatacaatgtaaatcaag 28844901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 10187976 - 10188037
Alignment:
Q  148 tgttgggaatgatt-ttttggagtgtcgtgttggattagaggaggatctgtgaggtaattatgt 210  Q
    |||||||||||||| ||||||||||  |||||||||||||||||||  ||||||||||||||||    
T  10187976 tgttgggaatgattattttggagtgcagtgttggattagaggagga--tgtgaggtaattatgt 10188037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 28844537 - 28844576
Alignment:
Q  195 tgtgaggtaattatgtagcgtataattgatgagttgtaaa 234  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  28844537 tgtgaggtaatcatgtagcgtataattgatgagttgtaaa 28844576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 4139953 - 4139986
Alignment:
Q  201 gtaattatgtagcgtataattgatgagttgtaaa 234  Q
    ||||||||||||||||||||||||||||||||||    
T  4139953 gtaattatgtagcgtataattgatgagttgtaaa 4139986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 352
Target Start/End: Original strand, 5368960 - 5368998
Alignment:
Q  314 ttttttacttgaattatttgaaatacaatgtaaatcaag 352  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  5368960 ttttttacttgaatcatttgaaatacaatataaatcaag 5368998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 47232315 - 47232234
Alignment:
Q  148 tgttgggaatgatttttt-ggagtgtcgtgttggattagaggaggatctgtgaggtaattatgtagcgtataattgatgagttgtaaa 234  Q
    |||||||||||||||||| ||||||| |||    |||||||||||||  |||||||||| ||||||||||||||||||||||||||||    
T  47232315 tgttgggaatgatttttttggagtgtagtg----attagaggaggat--gtgaggtaatcatgtagcgtataattgatgagttgtaaa 47232234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 47232177 - 47232107
Alignment:
Q  282 gaagattatgaactatattaaataaactattgttttttacttgaattatttgaaatacaatgtaaatcaag 352  Q
    |||||||| |||  |||||||||||| |||| |||||||||||||  ||||||||||||||||||||||||    
T  47232177 gaagattaggaatcatattaaataaattattattttttacttgaaccatttgaaatacaatgtaaatcaag 47232107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 25417791 - 25417738
Alignment:
Q  299 ttaaataaactattgttttttacttgaattatttgaaatacaatgtaaatcaag 352  Q
    ||||||||| |||| |||||||||||||  ||||||||||||||||||||||||    
T  25417791 ttaaataaattattattttttacttgaaccatttgaaatacaatgtaaatcaag 25417738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 300 - 352
Target Start/End: Complemental strand, 5766636 - 5766584
Alignment:
Q  300 taaataaactattgttttttacttgaattatttgaaatacaatgtaaatcaag 352  Q
    |||||||| |||| |||||||||||||  ||||||||||||||||||||||||    
T  5766636 taaataaattattattttttacttgaaccatttgaaatacaatgtaaatcaag 5766584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 5767013 - 5766974
Alignment:
Q  195 tgtgaggtaattatgtagcgtataattgatgagttgtaaa 234  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  5767013 tgtgaggtaatcatgtagcgtataattgatgagttgtaaa 5766974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 25418101 - 25418062
Alignment:
Q  195 tgtgaggtaattatgtagcgtataattgatgagttgtaaa 234  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  25418101 tgtgaggtaatcatgtagcgtataattgatgagttgtaaa 25418062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 39065382 - 39065329
Alignment:
Q  299 ttaaataaactattgttttttacttgaattatttgaaatacaatgtaaatcaag 352  Q
    ||||||||| |||| |||||||||||||   ||||||||||||| |||||||||    
T  39065382 ttaaataaattattattttttacttgaaccgtttgaaatacaatataaatcaag 39065329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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