View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1078_low_16 (Length: 365)

Name: NF1078_low_16
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1078_low_16
NF1078_low_16
[»] chr3 (7 HSPs)
chr3 (49-133)||(40941369-40941452)
chr3 (240-335)||(40951510-40951601)
chr3 (180-239)||(40947598-40947657)
chr3 (183-237)||(40941891-40941945)
chr3 (237-278)||(40942021-40942062)
chr3 (304-334)||(40942072-40942102)
chr3 (49-98)||(40928990-40929039)


Alignment Details
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 40941369 - 40941452
Alignment:
Q  49 tattgactacgatctcaaaatttcgaccaaacattttaaatttattcagttaaaagtgaatgcagaactgatagaatattgattg 133  Q
    |||||| ||| || ||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| ||||||||||||||    
T  40941369 tattgattacaatttcaaaatttcgaccaaacatttttaatttattcag-taaaagtgaatgcagagctgttagaatattgattg 40941452  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 240 - 335
Target Start/End: Original strand, 40951510 - 40951601
Alignment:
Q  240 tggtgagaagtcttgtttatgatcatgattgttgaacaattatttaaaacatggataaaacttcccttttatggtaattaaactcttcattacaac 335  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||| || | |||||| || ||||||||||||    ||||||||||||||||||    
T  40951510 tggtgagaagtcttgttaatgataatgattgttgaacaattatttacaatagggataacacctcccttttatgg----taaactcttcattacaac 40951601  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 40947598 - 40947657
Alignment:
Q  180 ggacttcaattatctacagcgctgcacagttgcatcactatagagaattctagatccata 239  Q
    |||||||| ||||||||||||| |||||||| |||||||||||||||||| |||||||||    
T  40947598 ggacttcagttatctacagcgccgcacagttccatcactatagagaattccagatccata 40947657  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 40941891 - 40941945
Alignment:
Q  183 cttcaattatctacagcgctgcacagttgcatcactatagagaattctagatcca 237  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||| |||||||    
T  40941891 cttcaattatctatagcgctgcacagttgcatcactttagagaattccagatcca 40941945  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 40942021 - 40942062
Alignment:
Q  237 atatggtgagaagtcttgtttatgatcatgattgttgaacaa 278  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  40942021 atatggtgagaagtcttgtttatgatcatgattgttgaacaa 40942062  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 334
Target Start/End: Original strand, 40942072 - 40942102
Alignment:
Q  304 ccttttatggtaattaaactcttcattacaa 334  Q
    |||||||||||||||||||||||||||||||    
T  40942072 ccttttatggtaattaaactcttcattacaa 40942102  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 40928990 - 40929039
Alignment:
Q  49 tattgactacgatctcaaaatttcgaccaaacattttaaatttattcagt 98  Q
    |||||| ||| |||||| |||||| |||||||||||| ||||||||||||    
T  40928990 tattgattacaatctcataatttcaaccaaacatttttaatttattcagt 40929039  T

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