View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1078_low_19 (Length: 341)
Name: NF1078_low_19
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1078_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 75 - 262
Target Start/End: Original strand, 8773710 - 8773897
Alignment:
| Q |
75 |
aggagcagagagagaggtagcagaattgtagcagtgttgtgaaccacatcaacccaacaaggctaacagaaacattagaggaaagaagaaagcaacaatc |
174 |
Q |
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| T |
8773710 |
aggagcagagagagaggtagcagaattgtagcagtgttgtgaaccacatcaacccaacaaggctaacagaaacattagaggaaagaagaaagcaacaatc |
8773809 |
T |
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| Q |
175 |
ttttctgtgaatcattaaatgcagtaaacggaatgagagagattgatcaaatcaaaaggagacaaaaacttcatttaattgtactctg |
262 |
Q |
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| T |
8773810 |
ttttctgtgaatcattaaatgcagtaaacggaatgagagagattgatcaaatcaaaaggagacaaaaacttcatttaattgtactctg |
8773897 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 153
Target Start/End: Complemental strand, 48597662 - 48597617
Alignment:
| Q |
108 |
gtgttgtgaaccacatcaacccaacaaggctaacagaaacattaga |
153 |
Q |
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| T |
48597662 |
gtgttgtgatcgacatcaacccaacaaggctaactgaaacattaga |
48597617 |
T |
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