View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1078_low_2 (Length: 648)
Name: NF1078_low_2
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1078_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 75 - 643
Target Start/End: Original strand, 21445159 - 21445715
Alignment:
| Q |
75 |
cagagaggattggatcagctgaactatgctttcctaatgcaggaatactaagagaacgttttcttaatttggctctaccatttgatgatagtttcttctc |
174 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21445159 |
cagaaaggattggatcagctgaactatgctttcctaatgcaggaatactaagagaacgttttcttaatttggctctaccatttgatgatagtttcttctc |
21445258 |
T |
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| Q |
175 |
actcttttcagcaagtaacgaaggataagcgcaaaagggttcttgagatgccactgctattggcaccgctattggcaccggctcacttctagttctaagg |
274 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21445259 |
actcttttctgcaagtaacgaaggataagcgcaaaagggttcttgagatgccactgcta------------ttggcaccggctcacttctagttctaagg |
21445346 |
T |
|
| Q |
275 |
aattggtcgagattttggcggtatttaatcccatggattttagctccaagctccacaacatcaagcttggtctttaactcatagtcatcatctgtccaat |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
21445347 |
aattggtcgagattttggcggtatttaatcccatggattttagctccaagctccacaacatcaagcttggtctttaactcgtaatcatcatctgtccaat |
21445446 |
T |
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| Q |
375 |
aaccattttccaacacatcttccattgcaagatcgtcgtactcttcatcagacttcgttgattcctcgtctacagatccaacctggagcgcaaaatacaa |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21445447 |
aaccattttccaacacatcttccattgcaagatcgtcgtactcttcatcagacttcgttgattcctcgtctacagatccaacctggagcgcaaaatacaa |
21445546 |
T |
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| Q |
475 |
aaggactcaaaattagttaaaagtactactatgtgtagcatcgatactttcagattgaaaatgtgtcaaatgtctgacaccgaccgacacaccaccgata |
574 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21445547 |
aaggactcaaaattagttaaaagtactactatgtgtagcatcgatactttcagattgaaaatgtgtcaaatgtctgacaccgaccgacacaccaccgata |
21445646 |
T |
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| Q |
575 |
ctctagtttacattgagttgatttcatattctcaaattattatcagtgttgtctagagtctgtggtgct |
643 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21445647 |
ctctagtttacattgagttgatttcatattctcaaattattatcagtgttgtctagagtctgtggtgct |
21445715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 359 - 444
Target Start/End: Complemental strand, 40686896 - 40686811
Alignment:
| Q |
359 |
tcatcatctgtccaataaccattttccaacacatcttccattgcaagatcgtcgtactcttcatcagacttcgttgattcctcgtc |
444 |
Q |
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|||||||||| |||||| ||| |||| |||||||| |||||| | ||| || ||||||||||||||||| |||||||||||||| |
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| T |
40686896 |
tcatcatctgaccaatatccactttcaggcacatcttgcattgccaaatcatcatactcttcatcagacttggttgattcctcgtc |
40686811 |
T |
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