View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1078_low_20 (Length: 336)
Name: NF1078_low_20
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1078_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 30 - 322
Target Start/End: Complemental strand, 43385848 - 43385556
Alignment:
| Q |
30 |
aaaaggctaggaaggtttgatcgagttggtaagttgtattggctatcttcctgttatctaatcatagttattttctgctaaacatcgtattcgaccattg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43385848 |
aaaaggctaggaaggtttgatcgagttggtaagttgtattggctatcttcctgttatctaatcatagttattttctgctaaacatcgtattcgaccattg |
43385749 |
T |
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| Q |
130 |
ctaaattcagtactgagtttttaatggcttccaagttccaagtataggtgcatgcgttcatatttttacattttcatctcaaaagtgagatgtataatta |
229 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43385748 |
ctaaattcggtactgagtttttaatggcttccaagttccaagtataggtgcatgcgttcatatttttacattttcatctcaaaagtgagatgtataatta |
43385649 |
T |
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| Q |
230 |
aatctcccctcctcattcctcaaaatctaatttgaaatcaattaagaaattatgagtatcaaaattacacaggaatattagaaagcggcaaca |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43385648 |
aatctcccctcctcattcctcaaaatctaatttgaaatcaattaagaaattatgagtatcaaaattacacaggaatattagaaagcggcaaca |
43385556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 30 - 279
Target Start/End: Complemental strand, 8775272 - 8775031
Alignment:
| Q |
30 |
aaaaggctaggaaggtttgatcgagttggtaagttgtattggctatcttcctgttatctaatcatagttattttctgctaaacatcgtattcgaccattg |
129 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | |||||| |
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| T |
8775272 |
aaaaggctagaaaggtctgatcgagttggtaagttgtattggctatcttcctgttatctaatcagagttattttctgctaaacattgtatctgtccattg |
8775173 |
T |
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| Q |
130 |
ctaaattcagtactgagtttttaatggcttccaagttccaagtata-ggtgcatgcgttcatatttttacattttcatctcaaaagtgagatgtataatt |
228 |
Q |
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|| |||| ||||||||||||||| ||| |||||| |||| |||||||| |||||| ||| ||||||||||||||||| |||||||||||||| |
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| T |
8775172 |
ct--attcggtactgagtttttaaaggc-------ttccaaatatagggtgcatgtgttcatgtttgtacattttcatctcaaatgtgagatgtataata |
8775082 |
T |
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| Q |
229 |
aaatctcccctcctcattcctcaaaatctaatttgaaatcaattaagaaat |
279 |
Q |
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||| |||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
8775081 |
aaacctcccctcctcattcctcaaaatccaattttaaatcaattaagaaat |
8775031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 30 - 279
Target Start/End: Original strand, 1692100 - 1692341
Alignment:
| Q |
30 |
aaaaggctaggaaggtttgatcgagttggtaagttgtattggctatcttcctgttatctaatcatagttattttctgctaaacatcgtattcgaccattg |
129 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | |||||| |
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| T |
1692100 |
aaaaggctagaaaggtctgatcgagttggtaagttgtattggctatcttcctgttatctaatcacagttattttctgctaaacattgtatctgtccattg |
1692199 |
T |
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| Q |
130 |
ctaaattcagtactgagtttttaatggcttccaagttccaagtata-ggtgcatgcgttcatatttttacattttcatctcaaaagtgagatgtataatt |
228 |
Q |
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|| ||| ||||||||||||||| ||| |||||| |||| |||||| | |||||| ||| ||||||||||||||||| |||||||||||||| |
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| T |
1692200 |
ct--atttggtactgagtttttaaaggc-------ttccaaatatagggtgcaagtgttcatgtttgtacattttcatctcaaatgtgagatgtataata |
1692290 |
T |
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| Q |
229 |
aaatctcccctcctcattcctcaaaatctaatttgaaatcaattaagaaat |
279 |
Q |
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||| |||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
1692291 |
aaacctcccctcctcattcctcaaaatccaattttaaatcaattaagaaat |
1692341 |
T |
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