View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1078_low_21 (Length: 335)
Name: NF1078_low_21
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1078_low_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 33 - 320
Target Start/End: Complemental strand, 39956660 - 39956370
Alignment:
| Q |
33 |
actattgccctaaccgtaacctgtttctgccacgaaggaacagattttccttcaaaccccttttcaacggaaatctcatcaagttgttcatcggaggttt |
132 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39956660 |
actattgccctagccgtaacctgtttctgccacgaaggaacagattttccttcaaaccctttttcaatggaaatctcatcaagttgttcatcggaggttt |
39956561 |
T |
|
| Q |
133 |
cgacgtcacgtcgatgaggttctgaagccatgttacgatgaagatga---gtgaagagtgtggttgtgttgagtgtttggtttttgttttgcgattgtta |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39956560 |
cgacgtcacgtcgatgaggttctgaagccatgttacgatgaagatgatgagtgaaaagtgtggttgtgttgagtgtttggtttttgttttgcgattgtta |
39956461 |
T |
|
| Q |
230 |
atgaagtcgctttcgtgactactaggttgacatgctgtgtctatttatagtaaaggggtttggagagtttagagtggtttggtttacggag |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39956460 |
atgaagtcgctttcgtgactactaggttgacatgctgtgtctatttatagtaaaggggtttcgagagtttagagtggtttggtttacggag |
39956370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 33 - 245
Target Start/End: Complemental strand, 39940979 - 39940766
Alignment:
| Q |
33 |
actattgccctaaccgtaacctgtttctgccacgaaggaacagattttccttcaaaccccttttcaacggaaatctcatcaagttgttcatcggaggttt |
132 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39940979 |
actattgccctaacagtaacctgtttctgccacgaaggaacagattttccttcaaaccctttttcaatggaaatctcatcaagttgttcatcggaggttt |
39940880 |
T |
|
| Q |
133 |
cgacgtcacgtcgatgaggttctgaagccatgttacgatgaagatgagtgaagagtgtggttgtgt-tgagtgtttggtttttgttttgcgattgttaat |
231 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||| |
|
|
| T |
39940879 |
cgacgtcacgtcgatgaggttctggagccatgttacgatgaagatgagtgaagagtgtggttgtatcagagtgtttggttttgattttgcgattgttaat |
39940780 |
T |
|
| Q |
232 |
gaagtcgctttcgt |
245 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
39940779 |
gaagtcgctttcgt |
39940766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 28750801 - 28750890
Alignment:
| Q |
35 |
tattgccctaaccgtaacctgtttctgccacgaaggaacagattttccttcaaaccccttttcaacggaaatctcatcaagttgttcatc |
124 |
Q |
| |
|
|||||||||||| || |||||||||||||||| |||||||||| ||||||||||||| ||||| || |||||||| || ||||||||||| |
|
|
| T |
28750801 |
tattgccctaacagtgacctgtttctgccacgtaggaacagatgttccttcaaaccctttttccacagaaatctcctcgagttgttcatc |
28750890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 28741959 - 28742020
Alignment:
| Q |
38 |
tgccctaaccgtaacctgtttctgccacgaaggaacagattttccttcaaaccccttttcaa |
99 |
Q |
| |
|
||||||||| |||||||| |||||||||| ||||||| ||||||||||||||| ||||||| |
|
|
| T |
28741959 |
tgccctaacagtaacctgcttctgccacgtaggaacaagttttccttcaaaccctttttcaa |
28742020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University