View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1078_low_22 (Length: 328)
Name: NF1078_low_22
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1078_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 28215769 - 28215611
Alignment:
| Q |
11 |
cagagatggttccaatcttcgatataatttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcat |
110 |
Q |
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| T |
28215769 |
cagagatggttccaatcttcgatataatttctataaggattcttgccctgaagctgagaatattgttcgttccgctgttaccgatatttactctgatcat |
28215670 |
T |
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| Q |
111 |
agagaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatccaggttcc |
169 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28215669 |
agagaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatccaggttcc |
28215611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 32565537 - 32565382
Alignment:
| Q |
11 |
cagagatggttccaatcttcgatataatttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcat |
110 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||| |||||||||||||||| ||||||||||| |||| ||||||| |
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| T |
32565537 |
cagagatggttccaatcttcaatataatttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcat |
32565438 |
T |
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| Q |
111 |
agagaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatccaggt |
166 |
Q |
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| T |
32565437 |
agagaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatccaggt |
32565382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 32806722 - 32806567
Alignment:
| Q |
11 |
cagagatggttccaatcttcgatataatttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcat |
110 |
Q |
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| T |
32806722 |
cagagatggttccaatcttcaatataatttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcat |
32806623 |
T |
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| Q |
111 |
agagaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatccaggt |
166 |
Q |
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| T |
32806622 |
agagaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatccaggt |
32806567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 32815159 - 32815004
Alignment:
| Q |
11 |
cagagatggttccaatcttcgatataatttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcat |
110 |
Q |
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|
|||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||| |||||||||||||||| ||||||||||| |||| ||||||| |
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| T |
32815159 |
cagagatggttccaatcttcaatataatttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcat |
32815060 |
T |
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| Q |
111 |
agagaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatccaggt |
166 |
Q |
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| T |
32815059 |
agagaccttgcaccttctcttcttcgtcttttctttcatgattgcttcatccaggt |
32815004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 11 - 169
Target Start/End: Original strand, 28220455 - 28220610
Alignment:
| Q |
11 |
cagagatggttccaatcttcgatataatttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcat |
110 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||| | ||||| |
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| T |
28220455 |
cagagatggttccaatcttcaatataatttctataaggtttcttgccctcaagctgagaatattgttcgttccgctgttaccgatatttactttaatcat |
28220554 |
T |
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| Q |
111 |
agagaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatccaggttcc |
169 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
28220555 |
agagacc-tgcaccttctcttcttcgtctct--tttcatgattgcttcatccaggttcc |
28220610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 32309298 - 32309453
Alignment:
| Q |
11 |
cagagatggttccaatcttcgatataatttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcat |
110 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||| ||| |||||||||||| ||||||||||| |||| ||||||| |
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| T |
32309298 |
cagagatggttccaatcttcaatataatttctatagggattcttgccctcaagctgaagataatgttcgttccgctgttaccgatatctactttgatcat |
32309397 |
T |
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| Q |
111 |
agagaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatccaggt |
166 |
Q |
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| T |
32309398 |
agagaccttgcaccttctcttcttcgtcttttctttcatgattgcttcatccaggt |
32309453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 32799768 - 32799640
Alignment:
| Q |
11 |
cagagatggttccaatcttcgatataatttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcat |
110 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||| |||||||||||||||| ||||||||||| |||| ||||||| |
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| T |
32799768 |
cagagatggttccaatcttcaatataatttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcat |
32799669 |
T |
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| Q |
111 |
agagaccttgcaccttctcttcttcgtct |
139 |
Q |
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| T |
32799668 |
agagaccttgcaccttctcttcttcgtct |
32799640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 32305344 - 32305385
Alignment:
| Q |
125 |
ttctcttcttcgtctcttctttcatgattgcttcatccaggt |
166 |
Q |
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| T |
32305344 |
ttctcttcttcgtctcttctttcatgattgcttcatccaggt |
32305385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 301444 - 301596
Alignment:
| Q |
11 |
cagagatggttccaatcttcgatataatttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcat |
110 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||| ||||| ||||||| ||||||||| |||||| ||||||||||| ||| ||||||| |
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| T |
301444 |
cagagatggttccaatcttcaatataatttctatagggattctagccctcaagctgaagatattgttccttccgctgttaccgatatctaccttgatcat |
301543 |
T |
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| Q |
111 |
agagaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatcca |
163 |
Q |
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| T |
301544 |
agagaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatcca |
301596 |
T |
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