View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1078_low_23 (Length: 324)
Name: NF1078_low_23
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1078_low_23 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 84 - 324
Target Start/End: Complemental strand, 39868424 - 39868185
Alignment:
| Q |
84 |
cagagaaaaagtatcaaactgaagatagattttcaaactaatcttcatttatttcattagttaaaagctattgtatttggataaatttcagtatctggtt |
183 |
Q |
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| T |
39868424 |
cagagaaaaagtatcaaactgaagatagattttcaaactaatcttcatttatttcattagttaaaagctattgtatttggataaatttcagtatctggtt |
39868325 |
T |
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| Q |
184 |
tccatccccagactaaattattattattatcataatatatccttttcgatgcatcccagttaaagaatggactctaaagatcattttaataaatnnnnnn |
283 |
Q |
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| T |
39868324 |
tccatccccagactaaataattattattatcataatatatccttttcgatgcat-ccagttaaagaatggactctaaagatcattttaataaataaaaaa |
39868226 |
T |
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| Q |
284 |
nctgtaacaatgaggttactaagtgaaggaaaatgttattt |
324 |
Q |
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| T |
39868225 |
actgtaacaatgaggttactaagtgaaggaaaatgttattt |
39868185 |
T |
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