View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1078_low_25 (Length: 317)

Name: NF1078_low_25
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1078_low_25
NF1078_low_25
[»] chr6 (8 HSPs)
chr6 (80-244)||(4420089-4420253)
chr6 (108-183)||(33419186-33419261)
chr6 (121-183)||(33405338-33405400)
chr6 (112-185)||(12235489-12235561)
chr6 (108-144)||(19602191-19602227)
chr6 (108-146)||(6389756-6389794)
chr6 (108-146)||(34446578-34446616)
chr6 (108-152)||(13364707-13364751)
[»] chr7 (7 HSPs)
chr7 (108-214)||(41229236-41229344)
chr7 (102-176)||(7133251-7133330)
chr7 (108-184)||(12278848-12278923)
chr7 (108-176)||(23751913-23751980)
chr7 (108-148)||(23930232-23930272)
chr7 (108-146)||(29812672-29812710)
chr7 (108-213)||(21880165-21880271)
[»] chr8 (5 HSPs)
chr8 (108-176)||(39820442-39820509)
chr8 (108-154)||(12559106-12559152)
chr8 (109-154)||(27733861-27733906)
chr8 (141-177)||(14659673-14659709)
chr8 (108-184)||(20679366-20679441)
[»] chr5 (6 HSPs)
chr5 (109-184)||(26205725-26205805)
chr5 (108-213)||(42893373-42893479)
chr5 (108-176)||(43554534-43554607)
chr5 (108-184)||(7997137-7997212)
chr5 (108-146)||(39696007-39696045)
chr5 (108-136)||(25863217-25863245)
[»] chr4 (8 HSPs)
chr4 (108-213)||(3144587-3144698)
chr4 (108-175)||(49659502-49659569)
chr4 (108-215)||(18513173-18513287)
chr4 (108-177)||(33950149-33950218)
chr4 (108-148)||(20743284-20743324)
chr4 (142-184)||(10133755-10133797)
chr4 (108-146)||(31243556-31243594)
chr4 (115-159)||(15835633-15835677)
[»] chr3 (10 HSPs)
chr3 (116-184)||(12100290-12100357)
chr3 (108-159)||(20691332-20691383)
chr3 (108-177)||(21149080-21149149)
chr3 (108-176)||(25074802-25074875)
chr3 (108-184)||(24205012-24205087)
chr3 (108-146)||(25892473-25892511)
chr3 (108-158)||(40150567-40150617)
chr3 (108-184)||(12704622-12704703)
chr3 (108-176)||(15864846-15864913)
chr3 (108-148)||(25652037-25652077)
[»] chr2 (6 HSPs)
chr2 (108-146)||(25544494-25544532)
chr2 (108-159)||(2415330-2415381)
chr2 (108-146)||(23354660-23354698)
chr2 (108-215)||(34006928-34007037)
chr2 (108-148)||(12748697-12748737)
chr2 (108-148)||(30563422-30563462)
[»] chr1 (4 HSPs)
chr1 (111-183)||(11412739-11412811)
chr1 (108-151)||(42325573-42325616)
chr1 (102-148)||(6573996-6574042)
chr1 (108-176)||(42004920-42004993)
[»] scaffold0049 (1 HSPs)
scaffold0049 (108-146)||(56935-56973)
[»] scaffold0022 (1 HSPs)
scaffold0022 (108-178)||(90856-90925)
[»] scaffold0598 (1 HSPs)
scaffold0598 (108-144)||(8063-8099)


Alignment Details
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 80 - 244
Target Start/End: Complemental strand, 4420253 - 4420089
Alignment:
Q  80 gacaccatacacgccgacgacaatgatcatttgagaaaatgatataattcagtgtaaccataggtgttggtgtcagacaccaacgcgtgtccgacaccag 179  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  4420253 gacaccatacacgccgacgacgatgatcatttgagaaaatgatataattcagtgtaaccataggtgttggtgtcagacaccaacgtgtgtctgacaccag 4420154  T
Q  180 gacacctaatattagaagtgtccatgcttcataggtctaactacaaagtcttaaaatattctctg 244  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4420153 gacacctaatattaggagtgtccatgcttcataggtctaactacaaagtcttaaaatattctctg 4420089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 33419186 - 33419261
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttggtgtcagacaccaacgcgtgtccgacaccaggaca 183  Q
    |||||| ||| |||||||||||| |||||  ||| ||||||||||||||||||||||||||||| |||||||||||    
T  33419186 atttgaaaaattgatataattcaatgtaattatatgtgttggtgtcagacaccaacgcgtgtccaacaccaggaca 33419261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 33405338 - 33405400
Alignment:
Q  121 atataattcagtgtaaccataggtgttggtgtcagacaccaacgcgtgtccgacaccaggaca 183  Q
    |||||| ||| ||||| |||| ||||||||| |||||||| |||||||||| |||||||||||    
T  33405338 atataactcaatgtaatcatatgtgttggtgccagacaccgacgcgtgtccaacaccaggaca 33405400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 12235561 - 12235489
Alignment:
Q  112 gagaaaatgatataattcagtgtaaccataggtgttggtgtcagacaccaacgcgtgtccgacaccaggacacc 185  Q
    |||||||||| |||||||||||||| |||||||| | ||||| |||||| ||| ||||||| |||| |||||||    
T  12235561 gagaaaatgacataattcagtgtaatcataggtg-tcgtgtccgacaccgacgtgtgtccggcaccgggacacc 12235489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 19602227 - 19602191
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggt 144  Q
    ||||||||||||||||||||||||||||| |||||||    
T  19602227 atttgagaaaatgatataattcagtgtaatcataggt 19602191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 6389756 - 6389794
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgt 146  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  6389756 atttgagaaaatgatataatttagtgtaatcataggtgt 6389794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 34446578 - 34446616
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgt 146  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  34446578 atttgagaaaatgacataattcagtgtaatcataggtgt 34446616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 13364751 - 13364707
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttggtgt 152  Q
    |||||||||||| |||||||||||||||| |||| |||| |||||    
T  13364751 atttgagaaaatcatataattcagtgtaatcatatgtgtcggtgt 13364707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 214
Target Start/End: Complemental strand, 41229344 - 41229236
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttggtgtcagacaccaacgcgtgtccgacaccaggaca--cctaatattagaagtgtccatg 205  Q
    |||||||||||||| ||||||| || ||| |||||| || |||||| |||||||||||||||||| |||   ||||  |||||||| |||||||||| ||    
T  41229344 atttgagaaaatgacataattctgtataatcataggcgtcggtgtcggacaccaacgcgtgtccgtcactgcgacacgcctaatatgagaagtgtccgtg 41229245  T
Q  206 cttcatagg 214  Q
    |||||||||    
T  41229244 cttcatagg 41229236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 7133330 - 7133251
Alignment:
Q  102 atgatcatttgagaaaatgatataattcagtgtaaccataggtgttg-----gtgtcagacaccaacgcgtgtccgacac 176  Q
    ||||| |||||||||||||| |||||||||||||| |||||||| ||     ||||| |||||| |||||||||||||||    
T  7133330 atgataatttgagaaaatgacataattcagtgtaatcataggtggtgtgtcggtgtcggacaccgacgcgtgtccgacac 7133251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 12278848 - 12278923
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttggtgtcagacaccaacgcgtgtccgacaccaggacac 184  Q
    |||| ||||||||| ||||||||||||||  ||| |||| | |||| |||||||||||||||| |||||| ||||||    
T  12278848 atttaagaaaatgacataattcagtgtaattatatgtgtcg-tgtcggacaccaacgcgtgtctgacaccgggacac 12278923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 23751913 - 23751980
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttggtgtcagacaccaacgcgtgtccgacac 176  Q
    |||||| |||||||||||||| ||||||| |||||||| | ||||| |||||| ||||||||| |||||    
T  23751913 atttgataaaatgatataatttagtgtaatcataggtg-tcgtgtcggacaccgacgcgtgtcagacac 23751980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 23930232 - 23930272
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttg 148  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  23930232 atttgagaaaatgacataattcagtgtaatcataggtgttg 23930272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 29812710 - 29812672
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgt 146  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  29812710 atttgagaaaatgatataatttagtgtaatcataggtgt 29812672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 213
Target Start/End: Original strand, 21880165 - 21880271
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttggtgtcagacaccaacgcgtgtccgacaccaggaca--cctaatattagaagtgtccatg 205  Q
    |||||||||||| | ||||||||||||||  | | |||| |||||| |||| | || | |||||||||||||||||  ||||||   |||||||||| ||    
T  21880165 atttgagaaaattacataattcagtgtaattacaagtgtcggtgtcggaca-cgacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtg 21880263  T
Q  206 cttcatag 213  Q
    ||||||||    
T  21880264 cttcatag 21880271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 39820442 - 39820509
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttggtgtcagacaccaacgcgtgtccgacac 176  Q
    ||||||||||||||||||||| ||||||| |||||||| | ||||| |||||| |||||||||||||||    
T  39820442 atttgagaaaatgatataatttagtgtaatcataggtg-tcgtgtcggacaccgacgcgtgtccgacac 39820509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 12559152 - 12559106
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttggtgtca 154  Q
    ||||||||||||||||||||||||||||| |||| || |||||||||    
T  12559152 atttgagaaaatgatataattcagtgtaatcatatgtattggtgtca 12559106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 27733861 - 27733906
Alignment:
Q  109 tttgagaaaatgatataattcagtgtaaccataggtgttggtgtca 154  Q
    |||||||||||||||||||||| ||||| || | ||||||||||||    
T  27733861 tttgagaaaatgatataattcaatgtaatcacaagtgttggtgtca 27733906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 14659709 - 14659673
Alignment:
Q  141 aggtgttggtgtcagacaccaacgcgtgtccgacacc 177  Q
    |||||| |||||||||||||||||||||||| |||||    
T  14659709 aggtgtcggtgtcagacaccaacgcgtgtccaacacc 14659673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 20679441 - 20679366
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttggtgtcagacaccaacgcgtgtccgacaccaggacac 184  Q
    |||||||||||| | ||| ||||||||||  ||| |||| ||||||||||  |||| ||||||||||||| ||||||    
T  20679441 atttgagaaaatcacatagttcagtgtaattataagtgtcggtgtcagac-gcaacacgtgtccgacaccgggacac 20679366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 26205805 - 26205725
Alignment:
Q  109 tttgagaaaatgatataattcagtgtaaccataggtgt-----tggtgtcagacaccaacgcgtgtccgacaccaggacac 184  Q
    ||||||||||||| |||||||||||||| |||||||||     ||||||| ||||||||||||| ||||||||| ||||||    
T  26205805 tttgagaaaatgacataattcagtgtaatcataggtgtcgtgttggtgtcggacaccaacgcgtatccgacaccgggacac 26205725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 213
Target Start/End: Original strand, 42893373 - 42893479
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttggtgtcagacaccaacgcgtgtccgacaccaggacac--ctaatattagaagtgtccatg 205  Q
    |||||| ||||| | ||||| ||||||||  | | |||| |||||||||||| ||| ||||||||||||||||||||  ||||||| || ||||||||||    
T  42893373 atttgaaaaaatcacataatccagtgtaattacaagtgtcggtgtcagacac-aacacgtgtccgacaccaggacacgcctaatatgaggagtgtccatg 42893471  T
Q  206 cttcatag 213  Q
    ||||||||    
T  42893472 cttcatag 42893479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 43554534 - 43554607
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttg-----gtgtcagacaccaacgcgtgtccgacac 176  Q
    ||||||||||||||||||||| ||||||| ||||||||| |     ||||| |||||| |||||||||||||||    
T  43554534 atttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcggacaccgacgcgtgtccgacac 43554607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 7997212 - 7997137
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttggtgtcagacaccaacgcgtgtccgacaccaggacac 184  Q
    |||||||||||||||||||| ||||||||  ||| ||| | ||||| |||||  |||||||||||||| ||||||||    
T  7997212 atttgagaaaatgatataatacagtgtaattataagtg-tcgtgtcggacactgacgcgtgtccgacatcaggacac 7997137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 39696045 - 39696007
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgt 146  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  39696045 atttgagaaaatgatataatttagtgtaatcataggtgt 39696007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 136
Target Start/End: Original strand, 25863217 - 25863245
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaa 136  Q
    |||||||||||||||||||||||||||||    
T  25863217 atttgagaaaatgatataattcagtgtaa 25863245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 3144698 - 3144587
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttg-----gtgtcagacaccaacgcgtgtccgacaccag-gacacctaatattagaagtgtc 201  Q
    |||| |||||||||||||||| ||||||| ||||||||| |     ||||||||||||||||||||||| |||| ||  |||||||||   |||||||||    
T  3144698 atttcagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcagacaccaacgcgtgtccaacacgagacacacctaatccgagaagtgtc 3144599  T
Q  202 catgcttcatag 213  Q
    | ||||||||||    
T  3144598 cgtgcttcatag 3144587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 49659569 - 49659502
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttggtgtcagacaccaacgcgtgtccgaca 175  Q
    ||||||||||||||||||||| ||||||| ||||||| |||||||| |||||| || |||| ||||||    
T  49659569 atttgagaaaatgatataatttagtgtaatcataggttttggtgtcggacaccgacacgtgcccgaca 49659502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 215
Target Start/End: Complemental strand, 18513287 - 18513173
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgt-----tggtgtcagacaccaacgcgtgtccgacaccaggaca--cctaatattagaagtgt 200  Q
    |||||||||||||| |||||||| ||||| |||| ||||     | ||||| |||||| ||| ||||||||||||||||||  |||||| | || |||||    
T  18513287 atttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgtcggacaccgacgtgtgtccgacaccaggacacgcctaatctgaggagtgt 18513188  T
Q  201 ccatgcttcataggt 215  Q
    || ||||||||||||    
T  18513187 ccgtgcttcataggt 18513173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 33950149 - 33950218
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttggtgtcagacaccaacgcgtgtccgacacc 177  Q
    |||||||||||| | |||||| | ||||| |||| |||| ||||||||||||||||||||  ||||||||    
T  33950149 atttgagaaaatcacataatttaatgtaatcatatgtgtcggtgtcagacaccaacgcgtacccgacacc 33950218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 20743324 - 20743284
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttg 148  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  20743324 atttgagaaaatgacataattcagtgtaatcataggtgttg 20743284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 10133755 - 10133797
Alignment:
Q  142 ggtgttggtgtcagacaccaacgcgtgtccgacaccaggacac 184  Q
    ||||| ||||||||||||  |||||||||||||||||||||||    
T  10133755 ggtgtcggtgtcagacactgacgcgtgtccgacaccaggacac 10133797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 31243594 - 31243556
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgt 146  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  31243594 atttgagaaaatgacataattcagtgtaatcataggtgt 31243556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 15835677 - 15835633
Alignment:
Q  115 aaaatgatataattcagtgtaaccataggtgttggtgtcagacac 159  Q
    ||||| ||||||||| |||||| |||| |||||||||||||||||    
T  15835677 aaaattatataattccgtgtaatcatatgtgttggtgtcagacac 15835633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 12100290 - 12100357
Alignment:
Q  116 aaatgatataattcagtgtaaccataggtgttggtgtcagacaccaacgcgtgtccgacaccaggacac 184  Q
    |||||||||||||||||||||  |||||||| | |||| ||||| ||||||||||||||||| ||||||    
T  12100290 aaatgatataattcagtgtaataataggtgtcg-tgtctgacactaacgcgtgtccgacaccgggacac 12100357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 20691332 - 20691383
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttggtgtcagacac 159  Q
    |||||||||||||| |||||||||||||| |||| |||| ||||||||||||    
T  20691332 atttgagaaaatgacataattcagtgtaatcatatgtgtcggtgtcagacac 20691383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 21149080 - 21149149
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttggtgtcagacaccaacgcgtgtccgacacc 177  Q
    |||||||||||||| |||||||||||||| || || ||| | |||| |||||||||| ||||| ||||||    
T  21149080 atttgagaaaatgacataattcagtgtaatcaaagatgtcgttgtcggacaccaacgtgtgtctgacacc 21149149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 25074802 - 25074875
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttg-----gtgtcagacaccaacgcgtgtccgacac 176  Q
    |||||||||||||| |||||| ||||||| |||||| ||||     ||||| ||||||||||||||||||||||    
T  25074802 atttgagaaaatgacataattgagtgtaatcataggcgttgtgtcggtgtctgacaccaacgcgtgtccgacac 25074875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 24205087 - 24205012
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttggtgtcagacaccaacgcgtgtccgacaccaggacac 184  Q
    |||||||||||||| ||||| ||||||||  ||| |||| | |||| |||||  |||||||||||||||||||||||    
T  24205087 atttgagaaaatgacataatacagtgtaattataagtgtcg-tgtcggacactgacgcgtgtccgacaccaggacac 24205012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 25892473 - 25892511
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgt 146  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  25892473 atttaagaaaatgatataattcagtgtaatcataggtgt 25892511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 40150617 - 40150567
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttggtgtcagaca 158  Q
    ||||||||||||||||||||||| ||||| |||| |||| |||||| ||||    
T  40150617 atttgagaaaatgatataattcaatgtaatcatatgtgtcggtgtctgaca 40150567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 12704703 - 12704622
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttg-----gtgtcagacaccaacgcgtgtccgacaccaggacac 184  Q
    |||||| ||||||| |||||||| ||||| ||||||||| |     ||||| ||||||||||| ||||||||||||| ||||    
T  12704703 atttgaaaaaatgacataattcaatgtaatcataggtgtcgtgtcggtgtcggacaccaacgcatgtccgacaccagaacac 12704622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 15864846 - 15864913
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttggtgtcagacaccaacgcgtgtccgacac 176  Q
    |||||| |||||||||||||| ||||||| |||||||| | ||||| |||||| || |||||| |||||    
T  15864846 atttgaaaaaatgatataatttagtgtaatcataggtg-tcgtgtcggacaccgacacgtgtctgacac 15864913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 25652077 - 25652037
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttg 148  Q
    ||||||||||||||||||||||||||||   ||||||||||    
T  25652077 atttgagaaaatgatataattcagtgtagttataggtgttg 25652037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 25544494 - 25544532
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgt 146  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  25544494 atttgagaaaatgatataattcagtgtaatcataggtgt 25544532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 2415330 - 2415381
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttggtgtcagacac 159  Q
    |||||||||||| |||||||| |||||||| ||| |||||||||| ||||||    
T  2415330 atttgagaaaattatataattaagtgtaactatatgtgttggtgtgagacac 2415381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 23354698 - 23354660
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgt 146  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  23354698 atttgagaaaatgatataatttagtgtaatcataggtgt 23354660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 215
Target Start/End: Complemental strand, 34007037 - 34006928
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttggtgtcagacaccaacgcgtgtccgacacc--aggacacctaatattagaagtgtccatg 205  Q
    |||||||||| ||| |||||||||||||| ||||||||| |||||  |||||| |  |||||| ||||||  |  |||||||||   || ||||||| ||    
T  34007037 atttgagaaattgacataattcagtgtaatcataggtgtcggtgtgggacacctattcgtgtctgacaccggaacacacctaattcaaggagtgtccgtg 34006938  T
Q  206 cttcataggt 215  Q
    ||||||||||    
T  34006937 cttcataggt 34006928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 12748697 - 12748737
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttg 148  Q
    |||||||||||||| ||| |||||||||| |||||||||||    
T  12748697 atttgagaaaatgacatagttcagtgtaatcataggtgttg 12748737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 30563422 - 30563462
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttg 148  Q
    |||||||||||||| |||||||| |||||| ||||||||||    
T  30563422 atttgagaaaatgacataattcaatgtaactataggtgttg 30563462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 11412811 - 11412739
Alignment:
Q  111 tgagaaaatgatataattcagtgtaaccataggtgttggtgtcagacaccaacgcgtgtccgacaccaggaca 183  Q
    ||||||||||| |||||||| ||| | ||||||||| |||||  |||||||||  ||||||||||| ||||||    
T  11412811 tgagaaaatgacataattcaatgtgatcataggtgtcggtgttggacaccaacatgtgtccgacactaggaca 11412739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 151
Target Start/End: Original strand, 42325573 - 42325616
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttggtg 151  Q
    |||||||||||||| ||||||||||||||| ||| |||||||||    
T  42325573 atttgagaaaatgacataattcagtgtaacaatatgtgttggtg 42325616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 6573996 - 6574042
Alignment:
Q  102 atgatcatttgagaaaatgatataattcagtgtaaccataggtgttg 148  Q
    ||||| |||||||| |||||||||||| ||||||| |||||||||||    
T  6573996 atgataatttgagacaatgatataatttagtgtaatcataggtgttg 6574042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 42004993 - 42004920
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgtt-----ggtgtcagacaccaacgcgtgtccgacac 176  Q
    |||||||||||||| |||||| ||||||| ||||||||||     |||||| |||||| |||| ||||||||||    
T  42004993 atttgagaaaatgacataatttagtgtaatcataggtgttgtgtcggtgtcggacaccgacgcatgtccgacac 42004920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 56935 - 56973
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgt 146  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  56935 atttgagaaaatgatataattcagtgtaatcataagtgt 56973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 90856 - 90925
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggtgttggtgtcagacaccaacgcgtgtccgacacca 178  Q
    |||||||||||| ||||||||||||||||  |||  ||| | ||||||||| |||| ||||||||||||||    
T  90856 atttgagaaaatcatataattcagtgtaattatatatgtcgatgtcagaca-caacacgtgtccgacacca 90925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 8099 - 8063
Alignment:
Q  108 atttgagaaaatgatataattcagtgtaaccataggt 144  Q
    |||||||||||||| |||||||||||||| |||||||    
T  8099 atttgagaaaatgacataattcagtgtaaacataggt 8063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University