View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1078_low_26 (Length: 315)

Name: NF1078_low_26
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1078_low_26
NF1078_low_26
[»] chr1 (1 HSPs)
chr1 (4-315)||(39389767-39390078)


Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 4 - 315
Target Start/End: Original strand, 39389767 - 39390078
Alignment:
Q  4 ttctgatgaaaaaggaaaatcatccatggaggtgaatgatcaacatcaactgatatcggtatcagactcatttcagttgacaactttgcttatgttgtta 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39389767 ttctgatgaaaaaggaaaatcatccatggaggtgaatgatcaacatcaaccgatatcggtatcagactcatttcagttgacaactttgcttatgttgtta 39389866  T
Q  104 ccagggttgatcttgcttctagttctacttttgcttatgtatcttacacaaaaagtttcttttctgcaatagtcctttaatatattttcttttctgcatt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39389867 ccagggttgatcttgcttctagttctacttttgcttatgtatcttacacaaaaagtttcttttctgcaatagtcctttaatatattttcttttctgcatt 39389966  T
Q  204 gcttcttgttctacttttgcttatgtatcttacacaaaaagttgcttatgattttcaaaccaacttgtcaataattttcttttgcttttggcttccattt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39389967 gcttcttgttctacttttgcttatgtatcttacacaaaaagttgcttatgattttcaaaccaacttgtcaataattttcttttgcttttggcttccattt 39390066  T
Q  304 gacttgaatcat 315  Q
    ||||||||||||    
T  39390067 gacttgaatcat 39390078  T

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