View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1078_low_3 (Length: 634)

Name: NF1078_low_3
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1078_low_3
NF1078_low_3
[»] chr5 (1 HSPs)
chr5 (30-624)||(28763999-28764598)
[»] chr7 (4 HSPs)
chr7 (161-354)||(19326340-19326533)
chr7 (411-453)||(29106577-29106619)
chr7 (425-457)||(19779385-19779417)
chr7 (425-457)||(19887966-19887998)
[»] chr6 (2 HSPs)
chr6 (161-298)||(24254846-24254983)
chr6 (425-457)||(14749180-14749212)
[»] chr8 (1 HSPs)
chr8 (406-458)||(11339682-11339734)
[»] chr3 (2 HSPs)
chr3 (96-127)||(3625189-3625220)
chr3 (413-457)||(12735054-12735098)
[»] chr2 (1 HSPs)
chr2 (96-134)||(18914114-18914152)
[»] chr4 (1 HSPs)
chr4 (98-127)||(3561579-3561608)


Alignment Details
Target: chr5 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 30 - 624
Target Start/End: Complemental strand, 28764598 - 28763999
Alignment:
Q  30 gtttactgagtaacacatcaatcacccttgactgccgtagattgatgtacac-----cgattgtagcgaagtagttggttcctgcaatggattgatatgt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||| |||||||||||||||    
T  28764598 gtttactgagtaacacatcaatcacccttgactgccgtagattgatgtacactgattggattgtagcgaagtagttggttcctgtaatggattgatatgt 28764499  T
Q  125 ttgcttggaaagtccgcaaataaacatcaagccatctggtttcgtgtttggaacccagccacagggaatatatctgaaaaattaggatctttaaacaaac 224  Q
    |||||||||  |||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28764498 ttgcttggacggtccgcaaataagcatcgagccatctggttccgtgtttggaacccagccacagggaatatatctgaaaaattaggatctttaaacaaac 28764399  T
Q  225 ctcgcaagcgtggatctagcatgctcagatacacatttggttatgacaattcaactggaagttataaggtggtggggttcgatactagagaggtgaaagt 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28764398 ctcgcaagcgtggatctagcatgctcagatacacatttggttatgacatttcaactggaagttataaggtggtggggttcgatactagagaggtgaaagt 28764299  T
Q  325 tttcagtttgactgataatgtctggagaaatcttccatgtgttccggacaatgcgggcatagtttgctgggacaacaatgtcaataaaggtgagtattta 424  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28764298 tttcggtttgactgataatgtctggagaaatcttccatgtgttccggacaatgcgggcatagtttgctgggacaacaatgtcaataaaggtgagtattta 28764199  T
Q  425 agtggcactattaactggttggctattcaaaattggttacaatgtgataaatattgtgaaaatatttctattatgcgatttgtgattatttcgcttgatc 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28764198 agtggcactattaactggttggctattcaaaattggttacaatgtgataaatattgtgaaaatatttctattatgcgatttgtgattatttcgcttgatc 28764099  T
Q  525 ttggtgtggagacttataaaaagatgatgccccctccggattgtgatcaagtcccatttgtcattgagccaattattgcagtgttgatggactgcctttg 624  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28764098 ttggtatggagacttataaaaagatgatgccccctccggattgtgatcaagtcccatttgtcattgagccaattattgcagtgttgatggactgcctttg 28763999  T

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Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 161 - 354
Target Start/End: Complemental strand, 19326533 - 19326340
Alignment:
Q  161 tggtttcgtgtttggaacccagccacagggaatatatctgaaaaattaggatctttaaacaaacctcgcaagcgtggatctagcatgctcagatacacat 260  Q
    ||||||||| | ||||| || ||||| |||   ||||||||||||||| ||||||| |||||| ||||||   ||| || | ||| |||||| | |||||    
T  19326533 tggtttcgtatctggaatccggccactggggtaatatctgaaaaattaagatcttttaacaaaactcgcattggtgtatattgcaggctcaggttcacat 19326434  T
Q  261 ttggttatgacaattcaactggaagttataaggtggtggggttcgatactagagaggtgaaagttttcagtttgactgataatgtctggagaaa 354  Q
    |||| ||||| ||||||||||||| |||||||||||||   ||   | |||| |||||||||||||||||||||| ||||||| | ||||||||    
T  19326433 ttgggtatgataattcaactggaacttataaggtggtgctcttgagttctagtgaggtgaaagttttcagtttgagtgataatatttggagaaa 19326340  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 411 - 453
Target Start/End: Original strand, 29106577 - 29106619
Alignment:
Q  411 aaggtgagtatttaagtggcactattaactggttggctattca 453  Q
    |||||| |||||| ||||||||| |||||||||||||||||||    
T  29106577 aaggtgtgtatttgagtggcactcttaactggttggctattca 29106619  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 425 - 457
Target Start/End: Original strand, 19779385 - 19779417
Alignment:
Q  425 agtggcactattaactggttggctattcaaaat 457  Q
    ||||||||||||||||||||| |||||||||||    
T  19779385 agtggcactattaactggttgactattcaaaat 19779417  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 425 - 457
Target Start/End: Complemental strand, 19887998 - 19887966
Alignment:
Q  425 agtggcactattaactggttggctattcaaaat 457  Q
    ||||||||||||||||||||| |||||||||||    
T  19887998 agtggcactattaactggttgactattcaaaat 19887966  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 161 - 298
Target Start/End: Complemental strand, 24254983 - 24254846
Alignment:
Q  161 tggtttcgtgtttggaacccagccacagggaatatatctgaaaaattaggatctttaaacaaacctcgcaagcgtggatctagcatgctcagatacacat 260  Q
    ||||||||| | ||||| |||||||| || |  ||||||||||||||||||||||| ||  | ||||||||  ||  || | |||  |  || | |||||    
T  24254983 tggtttcgtatatggaatccagccactggtataatatctgaaaaattaggatcttttaaagagcctcgcaacggttcatattgcagtcgtagcttcacat 24254884  T
Q  261 ttggttatgacaattcaactggaagttataaggtggtg 298  Q
    |||| ||||| ||||||||||||| |||||||||||||    
T  24254883 ttgggtatgataattcaactggaacttataaggtggtg 24254846  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 425 - 457
Target Start/End: Original strand, 14749180 - 14749212
Alignment:
Q  425 agtggcactattaactggttggctattcaaaat 457  Q
    ||||||| |||||||||||||||||||||||||    
T  14749180 agtggcagtattaactggttggctattcaaaat 14749212  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 406 - 458
Target Start/End: Complemental strand, 11339734 - 11339682
Alignment:
Q  406 caataaaggtgagtatttaagtggcactattaactggttggctattcaaaatt 458  Q
    |||||| ||||  |||||||||||||||||| |||||||||||||||| ||||    
T  11339734 caataatggtgcatatttaagtggcactatttactggttggctattcagaatt 11339682  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 127
Target Start/End: Original strand, 3625189 - 3625220
Alignment:
Q  96 tagttggttcctgcaatggattgatatgtttg 127  Q
    ||||||||||||||||||||||||||||||||    
T  3625189 tagttggttcctgcaatggattgatatgtttg 3625220  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 413 - 457
Target Start/End: Complemental strand, 12735098 - 12735054
Alignment:
Q  413 ggtgagtatttaagtggcactattaactggttggctattcaaaat 457  Q
    |||| |||| ||||||||||| |||||||||||||||||| ||||    
T  12735098 ggtgcgtatgtaagtggcactgttaactggttggctattcgaaat 12735054  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 134
Target Start/End: Complemental strand, 18914152 - 18914114
Alignment:
Q  96 tagttggttcctgcaatggattgatatgtttgcttggaa 134  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  18914152 tagttggttcctgcaatggattgatttgtttgcgtggaa 18914114  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 127
Target Start/End: Complemental strand, 3561608 - 3561579
Alignment:
Q  98 gttggttcctgcaatggattgatatgtttg 127  Q
    ||||||||||||||||||||||||||||||    
T  3561608 gttggttcctgcaatggattgatatgtttg 3561579  T

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