View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1078_low_33 (Length: 300)
Name: NF1078_low_33
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1078_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 60 - 240
Target Start/End: Original strand, 37652765 - 37652945
Alignment:
| Q |
60 |
cagagatgaaataatggaccaaagatttccaagtgtgaaaaaccggaaatccatgtgagctggttgtagatttccaattagatatccacctttttcagga |
159 |
Q |
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| T |
37652765 |
cagagatgaaataatggaccaaagatttccaagtgtgaaaaaccggaaatccatgtgagctggttgtagatttccaattagatatccacctttttcagga |
37652864 |
T |
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| Q |
160 |
atccaatccattacccagaaaggaatttgttcaggatagatgttgaatttgttgatggcatccatggagtactcttctgtg |
240 |
Q |
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| T |
37652865 |
atccaatccattacccagaaaggaatttgttcaggatagatgttgaatttgttgatggcatccatggagtactcttctgtg |
37652945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 63 - 239
Target Start/End: Complemental strand, 45970114 - 45969938
Alignment:
| Q |
63 |
agatgaaataatggaccaaagatttccaagtgtgaaaaaccggaaatccatgtgagctggttgtagatttccaattagatatccacctttttcaggaatc |
162 |
Q |
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| T |
45970114 |
agatgaaacaatagaccaaagatttccaagcatgaaaaacctgaaatccatgtgagctggttgtaaatttcctatcaaataaccaccttcttctggaatc |
45970015 |
T |
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| Q |
163 |
caatccattacccagaaaggaatttgttcaggatagatgttgaatttgttgatggcatccatggagtactcttctgt |
239 |
Q |
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| T |
45970014 |
caatccattaaccacattggaatttgttccggatagatgttgaacttgttagttgcatctaaagagtactcttctgt |
45969938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 214
Target Start/End: Complemental strand, 4319137 - 4318995
Alignment:
| Q |
72 |
aatggaccaaagatttccaagtgtgaaaaaccggaaatccatgtgagctggttgtagatttccaattagatatccacctttttcaggaatccaatccatt |
171 |
Q |
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| T |
4319137 |
aatggcccaaaggtttccgagtgtgaaaaacctgaagtccatatgagcaggttgcagattgcctatgaagtatccaccttcctcagatatccagtccaca |
4319038 |
T |
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| Q |
172 |
acccagaaaggaatttgttcaggatagatgttgaatttgttga |
214 |
Q |
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| T |
4319037 |
agccatgaaggaatttgctcaggataaatgttaaacttgttga |
4318995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 214
Target Start/End: Original strand, 50759828 - 50759969
Alignment:
| Q |
73 |
atggaccaaagatttccaagtgtgaaaaaccggaaatccatgtgagctggttgtagatttccaattagatatccacctttttcaggaatccaatccatta |
172 |
Q |
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| T |
50759828 |
atggcccaaaggtttccgagtgtgaaaaacctgaagtccatatgagcaggttgcagattgcctatgaagtatccaccttcctcagatatccagtccacaa |
50759927 |
T |
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| Q |
173 |
cccagaaaggaatttgttcaggatagatgttgaatttgttga |
214 |
Q |
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| T |
50759928 |
gccatgaaggaatttgctcaggataaatgttaaacttgttga |
50759969 |
T |
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