View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1078_low_36 (Length: 288)

Name: NF1078_low_36
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1078_low_36
NF1078_low_36
[»] chr1 (5 HSPs)
chr1 (124-239)||(43711181-43711296)
chr1 (61-125)||(28957309-28957373)
chr1 (80-113)||(25662860-25662893)
chr1 (80-113)||(28138613-28138646)
chr1 (80-113)||(28141863-28141896)
[»] chr3 (4 HSPs)
chr3 (61-125)||(23049264-23049328)
chr3 (63-123)||(17544573-17544633)
chr3 (67-123)||(28716501-28716557)
chr3 (80-113)||(10557812-10557845)
[»] chr7 (9 HSPs)
chr7 (65-123)||(6374774-6374832)
chr7 (61-113)||(18973685-18973737)
chr7 (61-113)||(7570634-7570686)
chr7 (61-113)||(7577049-7577101)
chr7 (63-123)||(232025-232085)
chr7 (66-123)||(140190-140247)
chr7 (80-113)||(1636702-1636735)
chr7 (80-113)||(5189465-5189498)
chr7 (80-113)||(44672797-44672830)
[»] chr5 (5 HSPs)
chr5 (63-125)||(31375916-31375978)
chr5 (61-113)||(20473369-20473421)
chr5 (82-123)||(18016574-18016615)
chr5 (80-113)||(22036170-22036203)
chr5 (80-113)||(22039396-22039429)
[»] scaffold0086 (1 HSPs)
scaffold0086 (63-113)||(24235-24285)
[»] chr8 (5 HSPs)
chr8 (67-121)||(8855075-8855129)
chr8 (63-123)||(10649612-10649672)
chr8 (80-113)||(2847590-2847623)
chr8 (80-113)||(5952438-5952471)
chr8 (65-105)||(40955126-40955166)
[»] chr4 (3 HSPs)
chr4 (64-124)||(21557355-21557415)
chr4 (88-123)||(53671955-53671990)
chr4 (80-113)||(54900089-54900122)
[»] chr2 (8 HSPs)
chr2 (80-123)||(33749731-33749774)
chr2 (80-124)||(23259086-23259130)
chr2 (81-124)||(13613627-13613670)
chr2 (80-113)||(6276932-6276965)
chr2 (80-113)||(16881605-16881638)
chr2 (80-113)||(17039295-17039328)
chr2 (80-113)||(35077228-35077261)
chr2 (80-113)||(35080486-35080519)
[»] scaffold0884 (1 HSPs)
scaffold0884 (80-113)||(4299-4332)
[»] chr6 (2 HSPs)
chr6 (80-113)||(965071-965104)
chr6 (80-113)||(17733258-17733291)


Alignment Details
Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 124 - 239
Target Start/End: Original strand, 43711181 - 43711296
Alignment:
Q  124 gagttcaacacaaaaaattaacgaaatagacatgcatatgcggagtttcttataacaggtttactcacggcggtatattgaacaaaggtcattaattgtt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43711181 gagttcaacacaaaaaattaacgaaatagacatgcatatgcggagtttcttataacaggtttactcacggcggtatattgaacaaaggtcattaattgtt 43711280  T
Q  224 gcatcaccatctctgc 239  Q
    ||||||||||||||||    
T  43711281 gcatcaccatctctgc 43711296  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 28957309 - 28957373
Alignment:
Q  61 cctgtggatacgaattaaattattacttcgatataaattagtacacttgctaaaattgtatcaga 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28957309 cctgtggatacgaattaaattattacttcgatataaattagtacacttgctaaaattgtatcaga 28957373  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 25662893 - 25662860
Alignment:
Q  80 ttattacttcgatataaattagtacacttgctaa 113  Q
    ||||||||||||||||| ||||||||||||||||    
T  25662893 ttattacttcgatataagttagtacacttgctaa 25662860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 28138646 - 28138613
Alignment:
Q  80 ttattacttcgatataaattagtacacttgctaa 113  Q
    ||||||||||||||||| ||||||||||||||||    
T  28138646 ttattacttcgatataagttagtacacttgctaa 28138613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 28141896 - 28141863
Alignment:
Q  80 ttattacttcgatataaattagtacacttgctaa 113  Q
    ||||||||||||||||| ||||||||||||||||    
T  28141896 ttattacttcgatataagttagtacacttgctaa 28141863  T

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Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 23049264 - 23049328
Alignment:
Q  61 cctgtggatacgaattaaattattacttcgatataaattagtacacttgctaaaattgtatcaga 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  23049264 cctgtggatacgaattaaattattacttcgatataaattagtacacttgctaattttgtatcaga 23049328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 17544633 - 17544573
Alignment:
Q  63 tgtggatacgaattaaattattacttcgatataaattagtacacttgctaaaattgtatca 123  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  17544633 tgtggatacaaattaaattattacttcgatataaattagtacacttgctaattttgtatca 17544573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 28716557 - 28716501
Alignment:
Q  67 gatacgaattaaattattacttcgatataaattagtacacttgctaaaattgtatca 123  Q
    ||||||||||| ||||||||||||| ||||||||||||| |||||||  ||||||||    
T  28716557 gatacgaattatattattacttcgacataaattagtacatttgctaattttgtatca 28716501  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 10557845 - 10557812
Alignment:
Q  80 ttattacttcgatataaattagtacacttgctaa 113  Q
    ||||||||||||||||| ||||||||||||||||    
T  10557845 ttattacttcgatataagttagtacacttgctaa 10557812  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 6374774 - 6374832
Alignment:
Q  65 tggatacgaattaaattattacttcgatataaattagtacacttgctaaaattgtatca 123  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6374774 tggatacgaattaaattattacttcgatataaattagtatacttgctaaaattgtatca 6374832  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 18973737 - 18973685
Alignment:
Q  61 cctgtggatacgaattaaattattacttcgatataaattagtacacttgctaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18973737 cctgtggatacgaattaaattattacttcgatataaattagtacacttgctaa 18973685  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 7570634 - 7570686
Alignment:
Q  61 cctgtggatacgaattaaattattacttcgatataaattagtacacttgctaa 113  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7570634 cctgtgaatacgaattaaattattacttcgatataaattagtacacttgctaa 7570686  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 7577049 - 7577101
Alignment:
Q  61 cctgtggatacgaattaaattattacttcgatataaattagtacacttgctaa 113  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7577049 cctgtgaatacgaattaaattattacttcgatataaattagtacacttgctaa 7577101  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 232025 - 232085
Alignment:
Q  63 tgtggatacgaattaaattattacttcgatataaattagtacacttgctaaaattgtatca 123  Q
    ||||||||| |||| ||||||| ||| || |||||||||||||||||||||||||||||||    
T  232025 tgtggatacaaatttaattattgctttgaaataaattagtacacttgctaaaattgtatca 232085  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 140247 - 140190
Alignment:
Q  66 ggatacgaattaaattattacttcgatataaattagtacacttgctaaaattgtatca 123  Q
    ||||||||||| | ||||||||| ||||||| |||| |||||||||||  ||||||||    
T  140247 ggatacgaatttatttattactttgatataagttagaacacttgctaattttgtatca 140190  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 1636735 - 1636702
Alignment:
Q  80 ttattacttcgatataaattagtacacttgctaa 113  Q
    ||||||||||||||||| ||||||||||||||||    
T  1636735 ttattacttcgatataagttagtacacttgctaa 1636702  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 5189498 - 5189465
Alignment:
Q  80 ttattacttcgatataaattagtacacttgctaa 113  Q
    ||||||||||||||||| ||||||||||||||||    
T  5189498 ttattacttcgatataagttagtacacttgctaa 5189465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 44672830 - 44672797
Alignment:
Q  80 ttattacttcgatataaattagtacacttgctaa 113  Q
    ||||||||||||||||| ||||||||||||||||    
T  44672830 ttattacttcgatataagttagtacacttgctaa 44672797  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 31375916 - 31375978
Alignment:
Q  63 tgtggatacgaattaaattattacttcgatataaattagtacacttgctaaaattgtatcaga 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  31375916 tgtggatacgaattaaattattacttcgatataaattagtacacttgctaattttgtatcaga 31375978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 20473421 - 20473369
Alignment:
Q  61 cctgtggatacgaattaaattattacttcgatataaattagtacacttgctaa 113  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  20473421 cctgtggatatgaattaaattattacttcgatataaattagtgcacttgctaa 20473369  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 18016574 - 18016615
Alignment:
Q  82 attacttcgatataaattagtacacttgctaaaattgtatca 123  Q
    |||||||| |||||  ||||||||||||||||||||||||||    
T  18016574 attacttcaatatagtttagtacacttgctaaaattgtatca 18016615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 22036170 - 22036203
Alignment:
Q  80 ttattacttcgatataaattagtacacttgctaa 113  Q
    ||||||||||||||||| ||||||||||||||||    
T  22036170 ttattacttcgatataagttagtacacttgctaa 22036203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 22039396 - 22039429
Alignment:
Q  80 ttattacttcgatataaattagtacacttgctaa 113  Q
    ||||||||||||||||| ||||||||||||||||    
T  22039396 ttattacttcgatataagttagtacacttgctaa 22039429  T

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Target: scaffold0086 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 24235 - 24285
Alignment:
Q  63 tgtggatacgaattaaattattacttcgatataaattagtacacttgctaa 113  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24235 tgtggatacgaattaaattattacttcgatataaattaatacacttgctaa 24285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 8855129 - 8855075
Alignment:
Q  67 gatacgaattaaattattacttcgatataaattagtacacttgctaaaattgtat 121  Q
    ||||| |||||||||||||||||| ||||||||| || |||||||||||||||||    
T  8855129 gatacaaattaaattattacttcggtataaattaataaacttgctaaaattgtat 8855075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 10649612 - 10649672
Alignment:
Q  63 tgtggatacgaattaaattattacttcgatataaattagtacacttgctaaaattgtatca 123  Q
    ||||||||| |||| ||||||||||| ||| |||||||||| || |||||||||| |||||    
T  10649612 tgtggatacaaatttaattattactttgatttaaattagtatacatgctaaaattttatca 10649672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 2847623 - 2847590
Alignment:
Q  80 ttattacttcgatataaattagtacacttgctaa 113  Q
    ||||||||||||||||| ||||||||||||||||    
T  2847623 ttattacttcgatataagttagtacacttgctaa 2847590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 5952438 - 5952471
Alignment:
Q  80 ttattacttcgatataaattagtacacttgctaa 113  Q
    ||||||||||||||||| ||||||||||||||||    
T  5952438 ttattacttcgatataagttagtacacttgctaa 5952471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 40955166 - 40955126
Alignment:
Q  65 tggatacgaattaaattattacttcgatataaattagtaca 105  Q
    ||||||| |||| ||||||||||| ||||||||||||||||    
T  40955166 tggatacaaatttaattattacttggatataaattagtaca 40955126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 21557415 - 21557355
Alignment:
Q  64 gtggatacgaattaaattattacttcgatataaattagtacacttgctaaaattgtatcag 124  Q
    |||||||| |||| |||||||| ||| |||||| ||||||||||| |||||||||||||||    
T  21557415 gtggatacaaatttaattattaattctatataatttagtacacttactaaaattgtatcag 21557355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 123
Target Start/End: Original strand, 53671955 - 53671990
Alignment:
Q  88 tcgatataaattagtacacttgctaaaattgtatca 123  Q
    |||||||||||||| |||||||||||||||||||||    
T  53671955 tcgatataaattagcacacttgctaaaattgtatca 53671990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 54900089 - 54900122
Alignment:
Q  80 ttattacttcgatataaattagtacacttgctaa 113  Q
    ||||||||||||||||| ||||||||||||||||    
T  54900089 ttattacttcgatataagttagtacacttgctaa 54900122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 33749731 - 33749774
Alignment:
Q  80 ttattacttcgatataaattagtacacttgctaaaattgtatca 123  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||    
T  33749731 ttattacttcgatataagttagtacacttgctaaatttgtatca 33749774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 23259086 - 23259130
Alignment:
Q  80 ttattacttcgatataaattagtacacttgctaaaattgtatcag 124  Q
    |||||| |||||||||  |||||||||||||||||||||||||||    
T  23259086 ttattatttcgatatagtttagtacacttgctaaaattgtatcag 23259130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 124
Target Start/End: Original strand, 13613627 - 13613670
Alignment:
Q  81 tattacttcgatataaattagtacacttgctaaaattgtatcag 124  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||    
T  13613627 tattacttcgatataatttagttcacttgttaaaattgtatcag 13613670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 6276965 - 6276932
Alignment:
Q  80 ttattacttcgatataaattagtacacttgctaa 113  Q
    ||||||||||||||||| ||||||||||||||||    
T  6276965 ttattacttcgatataagttagtacacttgctaa 6276932  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 16881605 - 16881638
Alignment:
Q  80 ttattacttcgatataaattagtacacttgctaa 113  Q
    ||||||||||||||||| ||||||||||||||||    
T  16881605 ttattacttcgatataagttagtacacttgctaa 16881638  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 17039295 - 17039328
Alignment:
Q  80 ttattacttcgatataaattagtacacttgctaa 113  Q
    ||||||||||||||||| ||||||||||||||||    
T  17039295 ttattacttcgatataagttagtacacttgctaa 17039328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 35077228 - 35077261
Alignment:
Q  80 ttattacttcgatataaattagtacacttgctaa 113  Q
    ||||||||||||||||| ||||||||||||||||    
T  35077228 ttattacttcgatataagttagtacacttgctaa 35077261  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 35080486 - 35080519
Alignment:
Q  80 ttattacttcgatataaattagtacacttgctaa 113  Q
    ||||||||||||||||| ||||||||||||||||    
T  35080486 ttattacttcgatataagttagtacacttgctaa 35080519  T

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Target: scaffold0884 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 4332 - 4299
Alignment:
Q  80 ttattacttcgatataaattagtacacttgctaa 113  Q
    ||||||||||||||||| ||||||||||||||||    
T  4332 ttattacttcgatataagttagtacacttgctaa 4299  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 965071 - 965104
Alignment:
Q  80 ttattacttcgatataaattagtacacttgctaa 113  Q
    ||||||||||||||||| ||||||||||||||||    
T  965071 ttattacttcgatataagttagtacacttgctaa 965104  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 17733291 - 17733258
Alignment:
Q  80 ttattacttcgatataaattagtacacttgctaa 113  Q
    ||||||||||||||||| ||||||||||||||||    
T  17733291 ttattacttcgatataagttagtacacttgctaa 17733258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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