View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1078_low_38 (Length: 275)
Name: NF1078_low_38
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1078_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 34 - 221
Target Start/End: Complemental strand, 36429316 - 36429129
Alignment:
| Q |
34 |
ccacagataatttcaaaacgctttacccaatccaatgacgacctttggttttgatctgagttgaacagtttaagtttacaaaaattgaacatattagcaa |
133 |
Q |
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| T |
36429316 |
ccacaaataatttcaaaacgctttacccaatccaatgacgacctttggttttgatctgagttgaacagtttaagtttacaaaaattgaacatattagcaa |
36429217 |
T |
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| Q |
134 |
acattaattgcatattgagcttaacttcataggaacttatcaagtatataatggaaaaggaaaataaaattttattatatatctggaa |
221 |
Q |
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| T |
36429216 |
acattaattgcatattgagcttaacttcataggaacttatcaagtatgtaatggaaaaggaaattaaaattttattatatatctggaa |
36429129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 34 - 173
Target Start/End: Complemental strand, 36399704 - 36399565
Alignment:
| Q |
34 |
ccacagataatttcaaaacgctttacccaatccaatgacgacctttggttttgatctgagttgaacagtttaagtttacaaaaattgaacatattagcaa |
133 |
Q |
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||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
36399704 |
ccacaaataatttcaaaacgcttaccccaatccaatgatgacctttggttttgatctgagttgaatagtttaagttgacaaaaattgaacatattagcaa |
36399605 |
T |
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| Q |
134 |
acattaattgcatattgagcttaacttcataggaacttat |
173 |
Q |
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| T |
36399604 |
acattaatcgcgtattgagcttaatttcataggaatttat |
36399565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 34 - 221
Target Start/End: Complemental strand, 36435769 - 36435581
Alignment:
| Q |
34 |
ccacagataatttcaaaacgctttacccaatccaatgacgacctttggttttgatctgagttgaacagtttaagtttacaaaaattgaacatattagcaa |
133 |
Q |
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||||| ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||| || |
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| T |
36435769 |
ccacaaataatttcaaaacgcttaccccaatccaataatgacctttggttttgatctgagttgaacaatttatgtttccaaaaattgaa-atattaggaa |
36435671 |
T |
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| Q |
134 |
acattaattgcatattgagcttaacttcataggaacttatc-aagtatataatggaaaaggaaaataaaatttta-ttatatatctggaa |
221 |
Q |
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| T |
36435670 |
atattaactgcatattgagcgtaatttcataggaactcatcaaaatatataatggaaaatgaaaatataattttatttatatatcaggaa |
36435581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 34 - 176
Target Start/End: Complemental strand, 36407161 - 36407019
Alignment:
| Q |
34 |
ccacagataatttcaaaacgctttacccaatccaatgacgacctttggttttgatctgagttgaacagtttaagtttacaaaaattgaacatattagcaa |
133 |
Q |
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||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||| || |
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| T |
36407161 |
ccacaaatgatttcaaaacgctttacccaatccaatgatgacctttggttttgatctgagttgaacagtttaagtttacaaatatagaacatattaagaa |
36407062 |
T |
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| Q |
134 |
acattaattgcatattgagcttaacttcataggaacttatcaa |
176 |
Q |
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| |||| |||| || ||||||||||| |||| |||||||||| |
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| T |
36407061 |
aagttaactgcaaatcgagcttaactttatagaaacttatcaa |
36407019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 36370478 - 36370377
Alignment:
| Q |
35 |
cacagataatttcaaaacgctttacccaatccaatgacgacctttggttttgatctgagttgaacagtttaagtttacaaaaattgaacatattagcaaa |
134 |
Q |
| |
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|||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
36370478 |
cacaaataatttcaaaacgcttaacccaatccaatgatgacctttgattttgatctgagttgaacagtttaagtttacaaaaattgaatatattggcaaa |
36370379 |
T |
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| Q |
135 |
ca |
136 |
Q |
| |
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|| |
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| T |
36370378 |
ca |
36370377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 40 - 204
Target Start/End: Complemental strand, 36389509 - 36389345
Alignment:
| Q |
40 |
ataatttcaaaacgctttacccaatccaatgacgacctttggttttgatctgagttgaacagtttaagtttacaaaaattgaacatattagcaaacatta |
139 |
Q |
| |
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|||||||||||||| || ||||||||||||| ||||||||||||||||||||| | |||| |||||||| | |||||| |||||||| | |||||||| |
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| T |
36389509 |
ataatttcaaaacgtttgccccaatccaatgatgacctttggttttgatctgagat-aacaagttaagtttcccaaaattaaacatattgggaaacatta |
36389411 |
T |
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| Q |
140 |
attgcatattgagcttaacttcataggaacttatcaa-gtatataatggaaaaggaaaataaaatt |
204 |
Q |
| |
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|||||||||||||||||| ||| || ||| ||||||| |||| ||||||||||||||| |||||| |
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| T |
36389410 |
attgcatattgagcttaaattcttacgaatttatcaatatataaaatggaaaaggaaaacaaaatt |
36389345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 118 - 205
Target Start/End: Complemental strand, 36419263 - 36419173
Alignment:
| Q |
118 |
ttgaacatattagcaaacattaattgcatattgagcttaacttcataggaacttatcaagtata--taat-ggaaaaggaaaataaaattt |
205 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
36419263 |
ttgagcatattagcaatcattaattgcatattgagcttaacttcataggaacttatcaagtatatgtaatgggaaaaggaaaataaaattt |
36419173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 36376271 - 36376212
Alignment:
| Q |
34 |
ccacagataatttcaaaacgctttacccaatccaatgacgacctttggttttgatctgag |
93 |
Q |
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||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
36376271 |
ccacaaataatttcaaaacgctttccccaatccaatgatgacctttggttttgatctgag |
36376212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 36419323 - 36419260
Alignment:
| Q |
34 |
ccacagataatttcaaaacgctttacccaatccaatgacgacctttggttttgatctgagttga |
97 |
Q |
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||||| ||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| |
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| T |
36419323 |
ccacaaataatttcaaaacgcgtaacccaatccaatgatgacctttggttttgatctgagttga |
36419260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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