View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1078_low_39 (Length: 269)
Name: NF1078_low_39
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1078_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 29 - 240
Target Start/End: Complemental strand, 28438086 - 28437875
Alignment:
| Q |
29 |
cacagatgaataagaattcataccaaagaaccattcacttgcaccttcctttcttgaatcaccaccaccaccaacttgaaacatctcagcctttgaaatc |
128 |
Q |
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| T |
28438086 |
cacagatgaataagaattcataccaaagaaccattcacttgcaccttcctttcttgaatcaccaccaccaccaacttgaaacatctcagcctttgaaatc |
28437987 |
T |
|
| Q |
129 |
tcaagattctgaaacaaaataggttgaggcttttcaatgctaacctgagaaagcaaaacagttccactttctttcctgttattatcttcaaacaaggttg |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28437986 |
tcaagattctgaaacaaaataggttgaggcttttcaatgctaacctgagaaagcaaaacagttccactctctttcctgttattatcttcaaacaaggttg |
28437887 |
T |
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| Q |
229 |
ctaatctctgct |
240 |
Q |
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||||||| |||| |
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| T |
28437886 |
ctaatctttgct |
28437875 |
T |
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