View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1078_low_4 (Length: 632)
Name: NF1078_low_4
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1078_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 186 - 622
Target Start/End: Original strand, 3811426 - 3811861
Alignment:
| Q |
186 |
caacgattctattgctctagcctcgaactttaagttgtactgaaaagaatgagggcgagttgatttggatattgaatcttctcgagtgtaattggtttta |
285 |
Q |
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| T |
3811426 |
caacgattttattgctctagcctcgaactt-aagttgtactgaaaagaatgagggcgagttgatttggatattgaatcttctcgagtgtaattggtttta |
3811524 |
T |
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| Q |
286 |
gacggctctagaattgattataatttgaagttataatttacaatatttgtcaataaaattgtttagaattgatgaacattttcaaccaatatcagttgga |
385 |
Q |
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| T |
3811525 |
gaccgctctaaaattgattataatttgaagttataatttacaatatttgtcaataaaattgtttagaattgatgaacattttcaaccaataacagttgga |
3811624 |
T |
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| Q |
386 |
taatatggtaagatgttggagagaaaatttctatcaagctatagcccaagtgcataaccataatataagnnnnnnngacaaaaatagctcacaaattgtg |
485 |
Q |
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| T |
3811625 |
taagatggtaagatgttggagacaaaatttctatcaagctatagcccaagtgcataaccataatataagaaaaaaagacaaaaatagctcacaaattgtg |
3811724 |
T |
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| Q |
486 |
attcgtcacttcatgcttatatctcctctactttcttgacatacaactacctcaagtccctcaagagactagagatattatggtgaagaaaacttaagta |
585 |
Q |
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| T |
3811725 |
attcgtcacttcatgcttatatctcctctactttcttgacatacaactacctcaagtccctcaagagactagagatattatggtgaagaaaacttaagta |
3811824 |
T |
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| Q |
586 |
attttttacatttatactaactttccacttcttcttt |
622 |
Q |
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| T |
3811825 |
attttttacatttatactaactttccacttcttcttt |
3811861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 26 - 188
Target Start/End: Original strand, 3811207 - 3811369
Alignment:
| Q |
26 |
atcaaatctcacttgtactcattgtctaattattttgttctttttgaaataaataaataaacttgacctctgctctatttgcagagaggttaaaaaacat |
125 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3811207 |
atcaaatctcacttgtactcattgtttaattattttgttctttttgaaataaataaataaacttgatctctgctctatttgcagagaggttaaaaaacat |
3811306 |
T |
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| Q |
126 |
ggtgcaaagggaaaattcatacattcacattatgtagctatgtgatgaccaactatataccaa |
188 |
Q |
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| T |
3811307 |
ggtgcaaagggaaaattcatacattcacattatgtagctatgtgatgaccaactatataccaa |
3811369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 22271423 - 22271463
Alignment:
| Q |
294 |
tagaattgattataatttgaagttataatttacaatatttg |
334 |
Q |
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||||||||||| ||| |||||||||||||||||||| |||| |
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| T |
22271423 |
tagaattgattttaaattgaagttataatttacaatttttg |
22271463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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