View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1078_low_44 (Length: 266)
Name: NF1078_low_44
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1078_low_44 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0172 (1 HSPs) |
| | |
|
| [»] scaffold0655 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 29 - 244
Target Start/End: Original strand, 19932630 - 19932845
Alignment:
| Q |
29 |
agacggttgtatggaaactgtaagagctactattgcaaaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgat |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||| || ||||| |
|
|
| T |
19932630 |
agacggttgtatggaaactgtaagagctactattgtaaaggtaagggcatcactccacgcgcttccgtacgtgtatttatgaatatatttgtgtcgtgat |
19932729 |
T |
|
| Q |
129 |
gattattatagtgttgttgttttgaagtgaatgttgtgtgctatatattggtgatgtgatagttatcttggtggtgttgttttggcatgaatattatgtg |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19932730 |
gattattatagtgttgttgttttgaagtgaatgctatgtgctatatattgctgatgtgatagttatcttggtggtggtgttttggcatgaatattatgtg |
19932829 |
T |
|
| Q |
229 |
tattatttctgtggtg |
244 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
19932830 |
tattatttctgtggtg |
19932845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 63 - 244
Target Start/End: Original strand, 1311404 - 1311585
Alignment:
| Q |
63 |
gcaaaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgatgattattatagtgttgttgttttgaagtgaatgt |
162 |
Q |
| |
|
||||| ||||| | |||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1311404 |
gcaaatgtaagagtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattattatagtgttgttgttttgaagtgaatac |
1311503 |
T |
|
| Q |
163 |
tgtgtgctatatattggtgatgtgatagttatcttggtggtgttgttttggcatgaatattatgtgtattatttctgtggtg |
244 |
Q |
| |
|
| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1311504 |
tatgtgttatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattatttatgtggtg |
1311585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 40 - 241
Target Start/End: Complemental strand, 11035083 - 11034881
Alignment:
| Q |
40 |
tggaaactgtaagagctactattgcaaaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgatgattattatag |
139 |
Q |
| |
|
|||||||| |||||| |||||||| ||||||||||||||||| |||||| |||| ||| ||||| |||| ||||| ||| |||||||| ||||| ||| |
|
|
| T |
11035083 |
tggaaactttaagagttactattgagaaggtaagggcatcacttcacgcgtttccgtacatgtatatgtgtatataattgtgttgtgataattatcataa |
11034984 |
T |
|
| Q |
140 |
tgttgttgttttgaagtgaatg-ttgtgtgctatatattggtgatgtgatagttatcttggtggtgttgttttggcatgaatattatgtg-tattatttc |
237 |
Q |
| |
|
|| |||||||||||| |||||| || |||| |||||||||||| ||||||| ||||||||||| | ||| ||||| ||||||||||| || |||||||| |
|
|
| T |
11034983 |
tgatgttgttttgaaatgaatgattatgtgttatatattggtgttgtgataattatcttggtgat-ttgctttggtatgaatattatttgttattatttg |
11034885 |
T |
|
| Q |
238 |
tgtg |
241 |
Q |
| |
|
|||| |
|
|
| T |
11034884 |
tgtg |
11034881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 66 - 244
Target Start/End: Original strand, 3224669 - 3224849
Alignment:
| Q |
66 |
aaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgatgattattatagtgttgttgttttgaagtgaatgttgt |
165 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||| ||||| || ||||||||| |||||||| |||| ||| || |||||||| ||| |||||||| | |
|
|
| T |
3224669 |
aaggtaagggcatcactccacgcgtttccgtacatgtatatgattatatatttgtgttgtgataattagcatattgctgttgttt-gaaatgaatgttat |
3224767 |
T |
|
| Q |
166 |
gtgctata--tattggtgatgtgatagttatcttggtggtgttgttttggcatgaatattatgtg-tattatttctgtggtg |
244 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||||||||| |||||||||| ||||||||||||||| |||||||| ||||||| |
|
|
| T |
3224768 |
gtgctatatatattggtgttgtgataattatcttggtgttgttgttttgacatgaatattatgtgttattatttatgtggtg |
3224849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 29 - 243
Target Start/End: Original strand, 18901861 - 18902075
Alignment:
| Q |
29 |
agacggttgtatggaaactgtaagagctactattgcaaaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgat |
128 |
Q |
| |
|
|||||| ||||||||||| ||||||| |||| ||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
18901861 |
agacgggtgtatggaaacggtaagagttactgttgcaaaggtaagggtatcattccacgcgcttccgtacgtgtatttgtgaatatatttgtgttgtgat |
18901960 |
T |
|
| Q |
129 |
gattattatagtgttgttgttttgaagtgaatgttgtgtgctatatattggtgatgtgatagttatcttggtggtgttgttttggcatgaatattatgtg |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
18901961 |
gattattatagtgttgttgttttgaagtgaatgatatgtgctatatattggtgatgtgatagttatcttggtgttgttgtttttgcatgaatattatgtg |
18902060 |
T |
|
| Q |
229 |
tattatttctgtggt |
243 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
18902061 |
tattatttctgtggt |
18902075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 18153328 - 18153491
Alignment:
| Q |
66 |
aaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgatgattattatagtgttgttgttttgaagtgaatg-ttg |
164 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||| ||||| ||| || ||||| ||||| ||| || |||||||||||| |||||| || |
|
|
| T |
18153328 |
aaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtatataattgtgtggtgataattatcataatggtgttgttttgaaatgaatgatta |
18153427 |
T |
|
| Q |
165 |
tgtgctatatattggtgatgtgatagttatcttggtggtgttgttttggcatgaatattatgtgt |
229 |
Q |
| |
|
|||| |||||||||||| ||||||| ||||||||||||| ||| ||||| ||||||||||||||| |
|
|
| T |
18153428 |
tgtgttatatattggtgttgtgataattatcttggtggt-ttgctttggtatgaatattatgtgt |
18153491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 161
Target Start/End: Complemental strand, 51783630 - 51783498
Alignment:
| Q |
29 |
agacggttgtatggaaactgtaagagctactattgcaaaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgat |
128 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||| ||||||||||||| ||| | || |
|
|
| T |
51783630 |
agacggttgtatgagaactgtaagagctactattgcaaaggtaaaggcatcactccacgtgcttctgtacgtatatgtgtgaatatatttatgttataat |
51783531 |
T |
|
| Q |
129 |
gattattatagtgttgttgttttgaagtgaatg |
161 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
51783530 |
gattattatagtgttgttgttttgaagtaaatg |
51783498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 8e-73; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 58 - 244
Target Start/End: Original strand, 44668808 - 44668993
Alignment:
| Q |
58 |
ctattgcaaaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgatgattattatagtgttgttgttttgaagtg |
157 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
44668808 |
ctattgtaaaggtaagggcatcactctacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttt-gaagtg |
44668906 |
T |
|
| Q |
158 |
aatgttgtgtgctatatattggtgatgtgatagttatcttggtggtgttgttttggcatgaatattatgtgtattatttctgtggtg |
244 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44668907 |
aatgttatgtgctatatattggtgatgtgataattatcttggtgttgttgttttggcatgaatattatgtgtattatttatgtggtg |
44668993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 29 - 244
Target Start/End: Complemental strand, 3897474 - 3897255
Alignment:
| Q |
29 |
agacggttgtatggaaactgtaagagctactattgcaaaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatat--ttgcgttgtg |
126 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||| ||||||||||| ||||||||||| | |||| ||||||||| ||| |||||| ||| |||||| |
|
|
| T |
3897474 |
agacggttgtgtggaaactttaagagctactattgtaaaggtaagggtatcactccacgtgtttccgtacgtgtatatgtatatatataattgtgttgtg |
3897375 |
T |
|
| Q |
127 |
atgattattatagtgttgttgttttgaagtgaatg-ttgtgtgctatatattggtgatgtgatagttatcttggtggtgttgttttggcatgaatattat |
225 |
Q |
| |
|
|| |||||| | ||| |||||||||||| |||||| | |||| || ||||| ||| ||||||| |||| ||||||||||||||||||||||||||| || |
|
|
| T |
3897374 |
ataattattttggtggtgttgttttgaaatgaatgactatgtgttacatatttgtgttgtgataattattttggtggtgttgttttggcatgaatatcat |
3897275 |
T |
|
| Q |
226 |
gtg-tattatttctgtggtg |
244 |
Q |
| |
|
||| |||||||| ||||||| |
|
|
| T |
3897274 |
gtgttattatttgtgtggtg |
3897255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 61 - 244
Target Start/End: Complemental strand, 5537231 - 5537047
Alignment:
| Q |
61 |
ttgcaaaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgatgattattatagtgttgttgttttgaagtgaat |
160 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||| |||| ||||| ||| || ||||| ||||| ||| || |||||||||||| ||||| |
|
|
| T |
5537231 |
ttgcaaaggtaacagcatcactccacgcgcttccgtacgtgtatatgtgtatataattgtgtagtgataattatcataatggtgttgttttgaaatgaat |
5537132 |
T |
|
| Q |
161 |
g-ttgtgtgctatatattggtgatgtgatagttatcttggtggtgttgttttggcatgaatattatgtg-tattatttctgtggtg |
244 |
Q |
| |
|
| || |||| |||||| ||||| ||||||| ||||||||||||| ||| ||||| |||||||||||||| |||||||| ||||||| |
|
|
| T |
5537131 |
gattatgtgttatatagtggtgttgtgataattatcttggtggt-ttgctttggtatgaatattatgtgttattatttgtgtggtg |
5537047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 65 - 218
Target Start/End: Original strand, 6818492 - 6818647
Alignment:
| Q |
65 |
aaaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgatgattattatagtgttgttg-ttttgaagtgaatgtt |
163 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| | || ||||||||| ||||||| ||||| |||||| ||||| ||||||| |||||||| |
|
|
| T |
6818492 |
aaaggtaagggcatcactccacgcgcttatgtacgtgtatatttgtatatatttgtattgtgataattatcatagtggtgttgtttttgaaatgaatgtt |
6818591 |
T |
|
| Q |
164 |
gtgtgctatatattggtgatgtgatagttat-cttggtggtgttgttttggcatga |
218 |
Q |
| |
|
| || ||||| ||| || ||||||| |||| |||||||| |||| ||||||||| |
|
|
| T |
6818592 |
atctgttatatgttgttgttgtgataattatatttggtggttttgtcttggcatga |
6818647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 61 - 244
Target Start/End: Complemental strand, 21268351 - 21268168
Alignment:
| Q |
61 |
ttgcaaaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgatgattattatagtgttgttgttttgaagtgaat |
160 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
21268351 |
ttgcaaaggtaagggcatcacttcacgcgcttccgtacgtgtatgtgtgtatatatttgtgttgtgatgattattatagtgttgttgttttgaaatgagt |
21268252 |
T |
|
| Q |
161 |
gttgtgtgctatatattggtgatgtgatagttatcttggtggtgttgttttggcatgaatattatgtgtattatttctgtggtg |
244 |
Q |
| |
|
| | ||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||| ||||||||| ||||||| |
|
|
| T |
21268251 |
gctatgtgctatatattggtgatgtgataattatcttggtgatgttgtttttgcatgaatattatgggtattatttatgtggtg |
21268168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 61 - 244
Target Start/End: Original strand, 16421580 - 16421760
Alignment:
| Q |
61 |
ttgcaaaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgatgattattatagtgttgttgttttgaagtgaat |
160 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||| ||||||||| ||||| ||| ||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16421580 |
ttgcaaaggtaagggcatcactccacgcacgtccgtacgtgtatgtgtgactat--ttgtgttgtgatgattatcatagtgttgttgttttgaagtgaat |
16421677 |
T |
|
| Q |
161 |
gttgtgtgctatatattggtgatgtgatagttatcttggtggtgttgttttggcatgaatattatgtgtattatttctgtggtg |
244 |
Q |
| |
|
| | |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
16421678 |
gctatgtgttatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgt-tattatttttgtggtg |
16421760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 65 - 196
Target Start/End: Complemental strand, 48187501 - 48187370
Alignment:
| Q |
65 |
aaaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgatgattattatagtgttgttgttttgaagtgaatgttg |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
48187501 |
aaaggtaagggcatcactccacgcgcttccatacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgcta |
48187402 |
T |
|
| Q |
165 |
tgtgctatatattggtgatgtgatagttatct |
196 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |
|
|
| T |
48187401 |
tgtgctatatattggtgatgtgataattatct |
48187370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 66 - 244
Target Start/End: Complemental strand, 11283522 - 11283343
Alignment:
| Q |
66 |
aaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgatgattattatagtgttgttgttttgaagtgaatg-ttg |
164 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||| |||| ||| |||||||| ||||| ||| || |||||||| ||| |||||| || |
|
|
| T |
11283522 |
aaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtgtataattgtgttgtgataattatcataatgatgttgtttagaaatgaatgatta |
11283423 |
T |
|
| Q |
165 |
tgtgctatatattggtgatgtgatagttatcttggtggtgttgttttggcatgaatattatgtg-tattatttctgtggtg |
244 |
Q |
| |
|
|||| |||||||||||| ||||||| ||||||||||||| ||| ||||| |||||||||||||| |||||||| ||||||| |
|
|
| T |
11283422 |
tgtgttatatattggtgttgtgataattatcttggtggt-ttgctttggtatgaatattatgtgttattatttgtgtggtg |
11283343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 59 - 244
Target Start/End: Original strand, 36017872 - 36018059
Alignment:
| Q |
59 |
tattgcaaaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgatgattattatagtgttgttgttttgaagtga |
158 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||| |||| ||||| ||| |||||||| ||||| ||| || |||||||||||| ||| |
|
|
| T |
36017872 |
tattgcaaaggtaagggcatcactccacgtgcttccgtacgtgtatatgtgtatataattgtgttgtgataattatcatattggtgttgttttgaaatga |
36017971 |
T |
|
| Q |
159 |
atg-ttgtgtgctatatattggtgatgtgatagttatcttggtggtgttgttttggcatgaata-ttatgtg-tattatttctgtggtg |
244 |
Q |
| |
|
||| || |||| |||||||||||| ||||||| ||||||||||||| ||| |||| ||||||| ||||||| |||||||| ||||||| |
|
|
| T |
36017972 |
atgattatgtgttatatattggtgttgtgataattatcttggtggt-ttgctttgatatgaatatttatgtgttattatttgtgtggtg |
36018059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 59 - 244
Target Start/End: Complemental strand, 12528863 - 12528677
Alignment:
| Q |
59 |
tattgcaaaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgatgattattatagtgttgttgttttgaagtga |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| ||| ||| |||| ||| | ||| || |||||||||||| ||| |
|
|
| T |
12528863 |
tattgcaaaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtatataattgtgttatgataattgtcataatggtgttgttttgaaatga |
12528764 |
T |
|
| Q |
159 |
atg-ttgtgtgctatatattggtgatgtgatagttatcttggtggtgttgttttggcatgaatattatgtg-tattatttctgtggtg |
244 |
Q |
| |
|
||| || |||| |||||| || || ||||||| ||||||||||||| ||| ||| | |||||||||||||| |||||||| ||||||| |
|
|
| T |
12528763 |
atgattatgtgttatataatgatgttgtgataattatcttggtggt-ttgcttttgtatgaatattatgtgttattatttgtgtggtg |
12528677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 244
Target Start/End: Original strand, 28392925 - 28393058
Alignment:
| Q |
111 |
atatatttgcgttgtgatgattattatagtgttgttgttttgaagtgaatgttgtgtgctatatattggtgatgtgatagttatcttggtggtgttgttt |
210 |
Q |
| |
|
||||||||| || |||| ||||||||| ||||||||||||||| |||||||| |||| |||||||||||| |||| || || |||||||| |||||||| |
|
|
| T |
28392925 |
atatatttgttttttgataattattataatgttgttgttttgaaatgaatgttatgtgttatatattggtggtgtggtaattctcttggtgttgttgttt |
28393024 |
T |
|
| Q |
211 |
tggcatgaatattatgtgtattatttctgtggtg |
244 |
Q |
| |
|
||| |||||||||||||||||| ||| ||||||| |
|
|
| T |
28393025 |
tggtatgaatattatgtgtattctttttgtggtg |
28393058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 28384050 - 28384174
Alignment:
| Q |
111 |
atatatttgcgttgtgatgattattatagtgttgttgttttgaagtgaatgttgtgtgctatatattggtgatgtgatagttatcttggtggtgttgttt |
210 |
Q |
| |
|
|||||| || ||| |||| ||||| ||| ||||||||||||||| |||||||| |||| |||||||| ||| |||| || ||| |||||||||||||||| |
|
|
| T |
28384050 |
atatatctgtgttttgataattatcataatgttgttgttttgaaatgaatgttatgtgttatatattcgtggtgtggtaatta-cttggtggtgttgttt |
28384148 |
T |
|
| Q |
211 |
tggcatgaatattatgtgtattattt |
236 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
28384149 |
tggcatgaacattatgtgtattattt |
28384174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 16483968 - 16484041
Alignment:
| Q |
61 |
ttgcaaaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgatgattat |
134 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||| |||| ||||||||| |||||||| ||||| |
|
|
| T |
16483968 |
ttgcgaaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtatatatttgtgttgtgataattat |
16484041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 48186664 - 48186611
Alignment:
| Q |
191 |
ttatcttggtggtgttgttttggcatgaatattatgtgtattatttctgtggtg |
244 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48186664 |
ttatcttggtgttgttgttttggcatgaatattatgtgtattatttttgtggtg |
48186611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 16484017 - 16484069
Alignment:
| Q |
170 |
tatatattggtgatgtgatagttatcttggtggtgttgttttggcatgaatat |
222 |
Q |
| |
|
|||||||| ||| ||||||| ||||||||||||| |||||| ||||||||||| |
|
|
| T |
16484017 |
tatatatttgtgttgtgataattatcttggtggttttgtttcggcatgaatat |
16484069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 28393053 - 28393090
Alignment:
| Q |
199 |
gtggtgttgttttggcatgaatattatgtgtattattt |
236 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
28393053 |
gtggtggtgttttggcatgaacattatgtgtattattt |
28393090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 66 - 236
Target Start/End: Original strand, 15418853 - 15419023
Alignment:
| Q |
66 |
aaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgatgattattatagtgttgttgttttgaagtgaatgttgt |
165 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||| ||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| | | |
|
|
| T |
15418853 |
aaggtaagggcatcactccacacgcttccgtacgtatatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctat |
15418952 |
T |
|
| Q |
166 |
gtgctatatattggtgatgtgatagttatcttggtggtgttgttttggcatgaatattatgtgtattattt |
236 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15418953 |
gttttatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattattt |
15419023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 66 - 244
Target Start/End: Original strand, 15425870 - 15426048
Alignment:
| Q |
66 |
aaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgatgattattatagtgttgttgttttgaagtgaatgttgt |
165 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||| ||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| | | |
|
|
| T |
15425870 |
aaggtaagggcatcactccacacgcttccgtacgtatatgtgtgaatatatttgtgttgtgatgattatcatagtattgttgttttgaagtgaatgctat |
15425969 |
T |
|
| Q |
166 |
gtgctatatattggtgatgtgatagttatcttggtggtgttgttttggcatgaatattatgtgtattatttctgtggtg |
244 |
Q |
| |
|
|| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
15425970 |
gttctatatattggtgatgtgataattagcttggtggtgttgttttggcatgaatattatatgtattatttatgtggtg |
15426048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 244
Target Start/End: Complemental strand, 28654572 - 28654392
Alignment:
| Q |
65 |
aaaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgatgattattatagtgttgttgttttgaagtgaatg-tt |
163 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||| |||| ||||| || |||||||| ||||| ||| || ||||||||||| |||||| || |
|
|
| T |
28654572 |
aaaggtaagggcatcactccacgcgtttccgtacgtgtatatgtgtatataattctgttgtgataattatcataatggggttgttttgaaatgaatgatt |
28654473 |
T |
|
| Q |
164 |
gtgtgctatatattggtgatgtgatagttatcttggtggtgttgttttggcatgaatattatgtg-tattatttctgtggtg |
244 |
Q |
| |
|
|||| |||||||||||| ||||||| ||||||||||||| ||| ||||| ||||||||| || | |||||||| ||||||| |
|
|
| T |
28654472 |
atgtgttatatattggtgttgtgataattatcttggtggt-ttgctttggaatgaatattctgagttattatttgtgtggtg |
28654392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 52944699 - 52944768
Alignment:
| Q |
40 |
tggaaactgtaagagctactattgcaaaggtaagggcatcactccacgcgcttccatacgtgtatttgtg |
109 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||| ||||||| ||| ||||| |||| |
|
|
| T |
52944699 |
tggaaactttaagagctactattgagaaggtaagggcatcactccacacgcttccgtacatgtatatgtg |
52944768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 66 - 236
Target Start/End: Original strand, 24540576 - 24540746
Alignment:
| Q |
66 |
aaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgatgattattatagtgttgttgttttgaagtgaatgttgt |
165 |
Q |
| |
|
|||||||||| |||||||||| ||||||| ||||| ||| |||||||||||||| |||||||||||||| ||| |||||||||||||||||||||| | | |
|
|
| T |
24540576 |
aaggtaagggtatcactccacacgcttccgtacgtttatgtgtgaatatatttgtgttgtgatgattatcatattgttgttgttttgaagtgaatgctat |
24540675 |
T |
|
| Q |
166 |
gtgctatatattggtgatgtgatagttatcttggtggtgttgttttggcatgaatattatgtgtattattt |
236 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24540676 |
gttttatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgtgtattattt |
24540746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 62 - 244
Target Start/End: Original strand, 3509766 - 3509945
Alignment:
| Q |
62 |
tgcaaaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgatgattattatagtgttgttgttttgaagtgaatg |
161 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| || |||||| ||||||||| ||| ||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
3509766 |
tgcaaaggtaagggcatcattccatgcgcttccgtatgtgtatgtgtgaatat--ttgtgttgtgatggttaccatagtgttgttgttttgaagtgaatg |
3509863 |
T |
|
| Q |
162 |
ttgtgtgctatatattggtgatgtgatagttatcttggtggtgttgttttggcatgaatattatgtgtattatttctgtggtg |
244 |
Q |
| |
|
| ||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
3509864 |
ctatgtgctatatattggtgatgtgataattaccttggtgttgttgttttggcatgaatattatgt-tattatttatgtggtg |
3509945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 97 - 211
Target Start/End: Original strand, 15277846 - 15277960
Alignment:
| Q |
97 |
acgtgtatttgtgaatatatttgcgttgtgatgattattatagtgttgttgttttgaagtgaatgttgtgtgctatatattggtgatgtgatagttatct |
196 |
Q |
| |
|
|||||||| |||| ||||||||| ||| |||| |||| ||| | ||||||||| ||| |||||| | |||| |||||||||||| | ||||| |||||| |
|
|
| T |
15277846 |
acgtgtatgtgtgtatatatttgtgttttgataattaacataatattgttgtttggaaatgaatgctatgtgttatatattggtggtatgataattatct |
15277945 |
T |
|
| Q |
197 |
tggtggtgttgtttt |
211 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
15277946 |
tggtggtgttgtttt |
15277960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 61 - 244
Target Start/End: Original strand, 10292 - 10472
Alignment:
| Q |
61 |
ttgcaaaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgatgattattatagtgttgttgttttgaagtgaat |
160 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||| ||||||||| ||||| ||| ||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10292 |
ttgcaaaggtaagggcatcactccacgcacgtccgtacgtgtatgtgtgactat--ttgtgttgtgatgattatcatagtgttgttgttttgaagtgaat |
10389 |
T |
|
| Q |
161 |
gttgtgtgctatatattggtgatgtgatagttatcttggtggtgttgttttggcatgaatattatgtgtattatttctgtggtg |
244 |
Q |
| |
|
| | |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
10390 |
gctatgtgttatatattggtgatgtgataattatcttggtggtgttgttttggcatgaatattatgt-tattatttttgtggtg |
10472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 65 - 229
Target Start/End: Complemental strand, 34785 - 34620
Alignment:
| Q |
65 |
aaaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgatgattattatagtgttgttgttttgaagtgaatg-tt |
163 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||| ||| ||||| || |||||||| |||||| | ||| || | ||||||| |||| | || |
|
|
| T |
34785 |
aaaggtaagggcatcactccacgcgtttccgtacgtgtatatgtatatataactgtgttgtgataattattttggtggtgctattttgaaatgaaggatt |
34686 |
T |
|
| Q |
164 |
gtgtgctatatattggtgatgtgatagttatcttggtggtgttgttttggcatgaatattatgtgt |
229 |
Q |
| |
|
|||| | |||||| ||| ||||||| |||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
34685 |
atgtgttttatatttgtgttgtgataattattttggtggtgttgttttggcatgaatatcatgtgt |
34620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 229
Target Start/End: Original strand, 7491 - 7650
Alignment:
| Q |
66 |
aaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatat--atttgcgttgtgatgattattatagtgttgttgttttgaagtgaatgtt |
163 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| | | |||| ||||| |||||||| ||||| || |||||||| ||||| || ||| |
|
|
| T |
7491 |
aaggtaagggcatcactccacgcgcttccgtacatgtatgtttatatatctatttgtgttgtgataattatcatggtgttgtt---ttgaaatg---gtt |
7584 |
T |
|
| Q |
164 |
gtgtgctatatattggtgatgtgatagttatcttggtggtgttgttttggcatgaatattatgtgt |
229 |
Q |
| |
|
|||| ||| |||||||| ||| ||| ||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
7585 |
atgtgttatgtattggtgttgtaataattatcttggtggttttgttttgccatgaatattatgtgt |
7650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 229
Target Start/End: Original strand, 2038937 - 2039102
Alignment:
| Q |
65 |
aaaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgatgattattatagtgttgttgttttgaagtgaatg-tt |
163 |
Q |
| |
|
|||||||||| |||||||||||| |||||| ||| ||||| ||| ||||| || |||||||| |||||| | ||| || |||||||| |||| | || |
|
|
| T |
2038937 |
aaaggtaaggacatcactccacgtgcttccgtacatgtatatgtatatataactgtgttgtgataattattttggtggtgccgttttgaaatgaaggatt |
2039036 |
T |
|
| Q |
164 |
gtgtgctatatattggtgatgtgatagttatcttggtggtgttgttttggcatgaatattatgtgt |
229 |
Q |
| |
|
|||| | |||||| ||| | ||||| |||| ||||||||||||||||| ||||||||| |||||| |
|
|
| T |
2039037 |
atgtgttttatatttgtgttatgataattattttggtggtgttgttttgacatgaatatcatgtgt |
2039102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 229
Target Start/End: Complemental strand, 29963145 - 29963026
Alignment:
| Q |
111 |
atatatttgcgttgtgatgattattatagtgttgttgttttgaagtgaatg-ttgtgtgctatatattggtgatgtgatagttatcttggtggtgttgtt |
209 |
Q |
| |
|
||||| ||| |||||||| |||||| | ||| || |||||||| |||| | || |||| | |||||| ||| ||||||| |||| |||||||||||||| |
|
|
| T |
29963145 |
atataattgtgttgtgataattattttggtggtgcagttttgaaatgaaggattatgtgttttatatttgtgttgtgataattattttggtggtgttgtt |
29963046 |
T |
|
| Q |
210 |
ttggcatgaatattatgtgt |
229 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
29963045 |
ttggcatgaatatcatgtgt |
29963026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 32870353 - 32870275
Alignment:
| Q |
65 |
aaaggtaagggcatcactccacgcgcttccatacgtgtatttgtgaatatatttgcgttgtgatgattattatagtgtt |
143 |
Q |
| |
|
||||||||||| || ||||||| |||||| ||||| ||| |||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
32870353 |
aaaggtaagggtttcgctccacgtgcttccgtacgtatatatgtgtatatatttatgttgtgatgattatcatagtgtt |
32870275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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