View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1078_low_5 (Length: 625)
Name: NF1078_low_5
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1078_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 11 - 573
Target Start/End: Original strand, 45976449 - 45977011
Alignment:
| Q |
11 |
cacagatcctcttgcttagtcaagattaaagatgacaaacagatctcaaggttagtaaaattttgttatagatgcgactgataaattcttgtgcataagt |
110 |
Q |
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| T |
45976449 |
cacagatcctcttgcttagtcaagattaaagatgacaaacagatctcaaggttagtaaaattttgttatagatgcgactgataaattcttgtgcataagt |
45976548 |
T |
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| Q |
111 |
tttttattcacctcatattttccattgttcgtgttatggtttgttattaaacagggaatatgtagttgaccttgtcggggaaccaggaattgtccatggc |
210 |
Q |
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| T |
45976549 |
tttttattcacctcatattttccattgttcgtgttatggtttgttatttaacagggaatatgtagttgaccttgtcggggaaccaggaattgtccatggc |
45976648 |
T |
|
| Q |
211 |
ccagattcctccattaatggagcatatgtttcttctattccttcgccgtttcaaatttctcattttaaggaattacagtcaccttatatggatgatgaag |
310 |
Q |
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| T |
45976649 |
ccagattcctccattaatggagcatatgtttcttctattccttcgccgtttcaaatttctcattttaaggaattacagtcaccttatatggatgatgaag |
45976748 |
T |
|
| Q |
311 |
caagttctcaaccacctatttgttttgaccaaagttcttttgatcctgaaactcatccttatttaggtacttacatttttaccatgaatattgatcttcc |
410 |
Q |
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| T |
45976749 |
caagttctcaaccacctatttgttttgaccaaagttcttttgatcctgaaactcatccttatttaggtacttacatttttaccatgaattttgatcttac |
45976848 |
T |
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| Q |
411 |
aattttcacatgtatttcagattcaagtgcnnnnnnngaatctgtgatgccatagttatattcttggatacaaccttgaggatacatcatagtatcgtac |
510 |
Q |
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| T |
45976849 |
aattttcacatgtatttcagattcaagtgcaaagaaagaatctgtgatgccatagttatattcttggatacaaccttgaggatacatcatagtatcgtac |
45976948 |
T |
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| Q |
511 |
ttaaacttattcactatatcgattagccaggtgtactgtatgtccttagccaggtgttttgtc |
573 |
Q |
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| T |
45976949 |
ttaaacttattcactatatcgattagccaggtgtactgtatgtccttagccaggtgttttgtc |
45977011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 162 - 275
Target Start/End: Complemental strand, 28051763 - 28051650
Alignment:
| Q |
162 |
cagggaatatgtagttgaccttgtcggggaaccaggaattgtccatggcccagattcctccattaatggagcatatgtttcttctattccttcgccgttt |
261 |
Q |
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|||||| ||||| || |||||||| |||||||| |||| | | || ||||||||||| ||||||||||||||||| ||||| | ||||| || ||| |
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| T |
28051763 |
cagggagtatgttgtggaccttgttggggaaccgggaaatattaccgggccagattcctcaattaatggagcatatgtgtcttcaacaccttctccattt |
28051664 |
T |
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| Q |
262 |
caaatttctcattt |
275 |
Q |
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| T |
28051663 |
caaatttctcattt |
28051650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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