View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1078_low_50 (Length: 251)
Name: NF1078_low_50
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1078_low_50 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 35 - 251
Target Start/End: Original strand, 44574483 - 44574699
Alignment:
| Q |
35 |
attggatcattgacacaatgtacatgtattgtgaaaagtgggggctaatgtataggaaaaactaaaatttgagtttgtattcttgaaagaaaatgaattt |
134 |
Q |
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| T |
44574483 |
attggatcattgacacaatgtacatgtattgtgaaaagtgggggctaatgtataggaaaaactaaaatttgagtttgtattcttgaaagaaaatgaattt |
44574582 |
T |
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| Q |
135 |
aactgattgaccaaattataataatgaaggccaaatgtaaccaaatttaaatctaatctctaagctaatccagatagaaaggattcagatgcaaatcata |
234 |
Q |
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| T |
44574583 |
aacagatcgaccaaattataataatgaaggccaaatgtaaccaaatttaaatctaatctctaagctaatccagatagaaaggattcagatgcaaatcata |
44574682 |
T |
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| Q |
235 |
taaaactagaccaaaac |
251 |
Q |
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| T |
44574683 |
tacaactagaccaaaac |
44574699 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 25383102 - 25383067
Alignment:
| Q |
35 |
attggatcattgacacaatgtacatgtattgtgaaa |
70 |
Q |
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| T |
25383102 |
attggatcattgacacaatgtacatgtattatgaaa |
25383067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 10123310 - 10123339
Alignment:
| Q |
35 |
attggatcattgacacaatgtacatgtatt |
64 |
Q |
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| T |
10123310 |
attggatcattgacacaatgtacatgtatt |
10123339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 28245066 - 28245095
Alignment:
| Q |
35 |
attggatcattgacacaatgtacatgtatt |
64 |
Q |
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| T |
28245066 |
attggatcattgacacaatgtacatgtatt |
28245095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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