View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1078_low_56 (Length: 214)
Name: NF1078_low_56
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1078_low_56 |
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| [»] scaffold0729 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 75 - 186
Target Start/End: Complemental strand, 7898203 - 7898092
Alignment:
| Q |
75 |
gatcttgaccattgatctccacattatcaatggtcaagatcgtccattcccattttctttatatttgttctccattactttaattttgtctttgatcata |
174 |
Q |
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| T |
7898203 |
gatcttgaccattgatctccacattatcaatggtcaagatcgtccgttcccattttcgttatatttgttctccattactttaattttgtctttgatcata |
7898104 |
T |
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| Q |
175 |
attgttactctt |
186 |
Q |
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||| |||||||| |
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| T |
7898103 |
attattactctt |
7898092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 106
Target Start/End: Complemental strand, 39812313 - 39812281
Alignment:
| Q |
74 |
agatcttgaccattgatctccacattatcaatg |
106 |
Q |
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| T |
39812313 |
agatcttgaccattgatctccatattatcaatg |
39812281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 33029357 - 33029410
Alignment:
| Q |
62 |
gaagtaatatagagatcttgaccattgatctccacattatcaatggtcaagatc |
115 |
Q |
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| T |
33029357 |
gaagtaatgtggagatgttgaccattgatctccacattatcaatggttaagatc |
33029410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 55696093 - 55696135
Alignment:
| Q |
73 |
gagatcttgaccattgatctccacattatcaatggtcaagatc |
115 |
Q |
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| T |
55696093 |
gagatcttaaccattgatctccatattatcaatggtcaagatc |
55696135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 6777339 - 6777380
Alignment:
| Q |
73 |
gagatcttgaccattgatctccacattatcaatggtcaagat |
114 |
Q |
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| T |
6777339 |
gagatcttgaccattgatctccacattatcagtagtcaagat |
6777380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 4710181 - 4710137
Alignment:
| Q |
60 |
aggaagtaatatagagatcttgaccattgatctccacattatcaa |
104 |
Q |
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| T |
4710181 |
aggaaataatgtagagattttgaccattgatcttcacattatcaa |
4710137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0729 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0729
Description:
Target: scaffold0729; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 3917 - 3876
Alignment:
| Q |
73 |
gagatcttgaccattgatctccacattatcaatggtcaagat |
114 |
Q |
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| T |
3917 |
gagatcttgaccattgatctccacattatcagtagtcaagat |
3876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 26394423 - 26394473
Alignment:
| Q |
58 |
tgaggaagtaatatagagatcttgaccattgatctccacattatcaatggt |
108 |
Q |
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| T |
26394423 |
tgaggaaataatatggagatcttgaccatttattttcacattatcaatggt |
26394473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 21020103 - 21020054
Alignment:
| Q |
59 |
gaggaagtaatatagagatcttgaccattgatctccacattatcaatggt |
108 |
Q |
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| T |
21020103 |
gaggaaataatatggagatcttgaccatttattttcacattatcaatggt |
21020054 |
T |
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