View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1078_low_57 (Length: 214)
Name: NF1078_low_57
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1078_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 45 - 181
Target Start/End: Original strand, 27216023 - 27216159
Alignment:
| Q |
45 |
attctaccctataaaattaactttaaaaacctaatatttattttttataagatctttgtaatactaatatattactatataaattagttttctatttatt |
144 |
Q |
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| T |
27216023 |
attctaccctataaaattaactttaaaaacctaatatttattttttctaagatctttgtaatactaatatattactatataaattagttttctatttatt |
27216122 |
T |
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| Q |
145 |
ttccgaatactatataaattagttgctttttcatctc |
181 |
Q |
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| T |
27216123 |
ttacgaatactatataaattagttgctttttcttctc |
27216159 |
T |
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Back To:
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Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 56 - 175
Target Start/End: Original strand, 27222016 - 27222127
Alignment:
| Q |
56 |
taaaattaactttaaaaacctaatatttattttttataagatctttgtaatactaatatattactatataaattagttttctatttattttccgaatact |
155 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| || ||| |||||||| |||||||| |
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| T |
27222016 |
taaaattaactttaaaaacctaatattt---ttttataagatctttgtattactaatatattactatataaa-tatttt----tttattttacgaatact |
27222107 |
T |
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| Q |
156 |
atataaattagttgcttttt |
175 |
Q |
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||||| |||| ||| ||||| |
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| T |
27222108 |
atatatattacttgtttttt |
27222127 |
T |
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