View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1078_low_6 (Length: 602)
Name: NF1078_low_6
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1078_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 262 - 596
Target Start/End: Original strand, 10177776 - 10178093
Alignment:
| Q |
262 |
aaaacaagtttatgtataaacactaataagtgttaattaagctatttatccaaacaggatcttatagtctcacgctttacatgttaaaaatgtttgtatt |
361 |
Q |
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| T |
10177776 |
aaaacaagtttatgtataaacactaataagtgttaattaagctatttatccaaacaacgtcttatagtctcacgctttacatgtttaaaatgtttgtatt |
10177875 |
T |
|
| Q |
362 |
gtttgtt-ggtgtaaatatggaggaaatgtatctaattttgagggcagatcatgaattatgaagcctatatattaaatgaagcaatgttcagttcagctc |
460 |
Q |
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| T |
10177876 |
gtttgtttggtgtaaatatggaggaaatgtatctaattttgtgtgcagatcatgaattatga------------------agcaatgttcagttcagctc |
10177957 |
T |
|
| Q |
461 |
aatttcaatagttctctagaagcccgttataatcttttactagcatgaccttgacctaactgtttcaagttttaatagagttagtccttcacggtttgta |
560 |
Q |
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| T |
10177958 |
aatttcaatagttctctagaagcccgttataatcttttactagcatgaccttgacctaactgtttcaagttttaagagagttagtccttcacggttcgta |
10178057 |
T |
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| Q |
561 |
atagcttttacatggatcaaatgttctctttcattg |
596 |
Q |
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| T |
10178058 |
atagcttttacatggatcaaatgttctctttcattg |
10178093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 504 - 585
Target Start/End: Complemental strand, 10283500 - 10283420
Alignment:
| Q |
504 |
catgaccttgacctaactgtttcaagttttaatagagttagtccttcacggtttgtaatagcttttacatggatcaaatgtt |
585 |
Q |
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| T |
10283500 |
catgacctttacataactgtttcaacttttaggatagttagtccttcatggtttctaata-tttttacatggatgaaatgtt |
10283420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 22 - 263
Target Start/End: Original strand, 18731766 - 18732008
Alignment:
| Q |
22 |
aaaggttgaagaataacttgattatttcattgatatggcagcctttaaatagctgaaggtatagacataacaatgaatgaaattaaatgtacaataattt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18731766 |
aaaggttgaagaataacttgattatttcattgatattgcaacctttaaatagctgaaggtatagacataacaatgaatgaaattaaatgtacaataattt |
18731865 |
T |
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| Q |
122 |
acaatgaaggcatatttgctaaataggacagaaagtaaacaacaacaatgatgttgtga-tttgtcaactgtcatgattcaattttctgatatatgacag |
220 |
Q |
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| T |
18731866 |
acaatgaaggcatatttgctaaataagacagaaagtaaacaacaacaatgatgttgtgattttgtcaactgtcatgattcaattttctgatatatgacag |
18731965 |
T |
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| Q |
221 |
ctttaagttgactttggatagcttaatgtatttccttaataaa |
263 |
Q |
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| T |
18731966 |
ctttaagtttactttggacagcttaatgtatttccttaataaa |
18732008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 22 - 261
Target Start/End: Original strand, 32322323 - 32322563
Alignment:
| Q |
22 |
aaaggttgaagaataacttgattatttcattgatatggcagcctttaaatagctgaaggtatagacataacaatgaatgaaattaaatgtacaataattt |
121 |
Q |
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|||||||||||||| | ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32322323 |
aaaggttgaagaatgaattgcttatttcattgatattgcagcctttaaatagctgaaggtatagacataacaatgaatgaaattaaatgtacaataattt |
32322422 |
T |
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| Q |
122 |
acaatgaaggcatatttgctaaataggacagaaagtaaacaacaacaatgatgttgtga-tttgtcaactgtcatgattcaattttctgatatatgacag |
220 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32322423 |
acaatgaaggcatatttgctaaataagacagaaagtaaacaacaacaatgatgttgtgattttgtcaactgtcatgattcaattttctgatatatgacag |
32322522 |
T |
|
| Q |
221 |
ctttaagttgactttggatagcttaatgtatttccttaata |
261 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| |
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| T |
32322523 |
ctttaagttgactttggacagcttaatgtatttccttaata |
32322563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 22 - 261
Target Start/End: Original strand, 32326734 - 32326974
Alignment:
| Q |
22 |
aaaggttgaagaataacttgattatttcattgatatggcagcctttaaatagctgaaggtatagacataacaatgaatgaaattaaatgtacaataattt |
121 |
Q |
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|||||||||||||| | ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32326734 |
aaaggttgaagaatgaattgcttatttcattgatattgcagcctttaaatagctgaaggtatagacataacaatgaatgaaattaaatgtacaataattt |
32326833 |
T |
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| Q |
122 |
acaatgaaggcatatttgctaaataggacagaaagtaaacaacaacaatgatgttgtga-tttgtcaactgtcatgattcaattttctgatatatgacag |
220 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32326834 |
acaatgaaggcatatttgctaaataagacagaaagtaaacaacaacaatgatgttgtgattttgtcaactgtcatgattcaattttctgatatatgacag |
32326933 |
T |
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| Q |
221 |
ctttaagttgactttggatagcttaatgtatttccttaata |
261 |
Q |
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| T |
32326934 |
ctttaagttgactttggacagcttaatgtatttccttaata |
32326974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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