View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1078_low_9 (Length: 478)
Name: NF1078_low_9
Description: NF1078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1078_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 288 - 471
Target Start/End: Original strand, 16885361 - 16885544
Alignment:
| Q |
288 |
atataatttcactaatgaatgtttttatcaaatgatttatcatttgtatgtataagagcaaaaatagactatgtttatgttctaatatcgttcatattat |
387 |
Q |
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| T |
16885361 |
atataatttcactaatgaatgtttttatcaaatgatttatcatttgtatgtataagagcaaaaatagactatgtttatgttctaatatcgttcatattat |
16885460 |
T |
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| Q |
388 |
ataatccaaacatttttaaaacgttttagattatataatatgaaatatccgtttttaaaaccacaattttcttcttctgtggtg |
471 |
Q |
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| T |
16885461 |
ataatccaaacatttttaaaacgttttagattatataatatgaaatatccgtttttaaaaccacaattttcttcttctgtggtg |
16885544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 288 - 471
Target Start/End: Original strand, 17043051 - 17043234
Alignment:
| Q |
288 |
atataatttcactaatgaatgtttttatcaaatgatttatcatttgtatgtataagagcaaaaatagactatgtttatgttctaatatcgttcatattat |
387 |
Q |
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| T |
17043051 |
atataatttcactaatgaatgtttttatcaaatgatttatcatttgtatgtataagagcaaaaatagactatgtttatgttctaatatcgttcatattat |
17043150 |
T |
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| Q |
388 |
ataatccaaacatttttaaaacgttttagattatataatatgaaatatccgtttttaaaaccacaattttcttcttctgtggtg |
471 |
Q |
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| T |
17043151 |
ataatccaaacatttttaaaacgttttagattatataatatgaaatatccgtttttaaaaccacaattttcttcttctgtggtg |
17043234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 80 - 218
Target Start/End: Original strand, 16885153 - 16885291
Alignment:
| Q |
80 |
cagagaccatgtcttatccgttgtggacagtggtgtggtggaaagagggttcctagagctacccaatagtttcatagtgctattgtactattttgaacaa |
179 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
16885153 |
cagagaccatgtcttatccattgtggacagtggtgtggtggaaagagggttcctagggctacccaatagtttcatagtgctgttgtactattttgaacaa |
16885252 |
T |
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| Q |
180 |
atttaatgtttgaatatttggtttgtaacgtacagacaa |
218 |
Q |
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| T |
16885253 |
atttaatgtttgaatatttggtttgtaacgtacagacaa |
16885291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 80 - 218
Target Start/End: Original strand, 17042843 - 17042981
Alignment:
| Q |
80 |
cagagaccatgtcttatccgttgtggacagtggtgtggtggaaagagggttcctagagctacccaatagtttcatagtgctattgtactattttgaacaa |
179 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17042843 |
cagagaccatgtcttatccattgtggacagtggtgtggtggaaagagggttcctagggctacccaatagtttcatagtgctgttgtactattttgaacaa |
17042942 |
T |
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| Q |
180 |
atttaatgtttgaatatttggtttgtaacgtacagacaa |
218 |
Q |
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| T |
17042943 |
atttaatgtttgaatatttggtttgtaacgtacagacaa |
17042981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 7034418 - 7034466
Alignment:
| Q |
160 |
tattgtactattttgaacaaatttaatgtttgaatatttggtttgtaac |
208 |
Q |
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||||||| ||||||||||| |||| |||||||||||||| |||| |||| |
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| T |
7034418 |
tattgtagtattttgaacatatttgatgtttgaatattttgtttctaac |
7034466 |
T |
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