View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10790_2 (Length: 335)
Name: NF10790_2
Description: NF10790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10790_2 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 51739827 - 51739501
Alignment:
| Q |
1 |
cttatcatccatcttcgtattaaccatcatattaaacaccaataagcaacccatttctacaatcaatgcggcagacacagcgattcgaccgacatcagat |
100 |
Q |
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| T |
51739827 |
cttatcatccatcttcgtattaaccatcatattaaacaccaataagcaacccatttctacaatcaatgcggcggacacagcgattcgaccgacatcagat |
51739728 |
T |
|
| Q |
101 |
gcggcaaaccttaaatctgctgccaaacggatgaccataggggaacttgtgtatggtacaactaacataataatcatacagaaataaaaccttgaaccat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51739727 |
gcggcaaaccttaaatctgctgccaaacggatgaccataggggaacttgtgtatgatacaactaacataataatcatacagaaataaaaccttgaaccat |
51739628 |
T |
|
| Q |
201 |
cgatgcctaattcttgatataaataaaatgagacagatagaccaaaaattacacccattaccacaccaccacatgctaccaagctcactaaacgtagatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51739627 |
cgatgcctaattcttgatataaataaaatgagacagatagaccaaaaattacacccattaccacaccaccacatgctaccaagctcactaaacgtagatt |
51739528 |
T |
|
| Q |
301 |
acgcaatgcgtattgaatattcatctc |
327 |
Q |
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||||||||||||||||||||||||||| |
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| T |
51739527 |
acgcaatgcgtattgaatattcatctc |
51739501 |
T |
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