View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10791_high_1 (Length: 283)

Name: NF10791_high_1
Description: NF10791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10791_high_1
NF10791_high_1
[»] chr3 (10 HSPs)
chr3 (16-283)||(38041930-38042197)
chr3 (16-232)||(50906759-50906976)
chr3 (28-215)||(50913498-50913685)
chr3 (25-217)||(38035054-38035246)
chr3 (28-194)||(38027457-38027623)
chr3 (28-194)||(38038549-38038715)
chr3 (28-194)||(38032284-38032450)
chr3 (122-276)||(55086775-55086929)
chr3 (31-156)||(55082716-55082840)
chr3 (181-217)||(55082684-55082720)
[»] chr8 (1 HSPs)
chr8 (28-194)||(21608259-21608425)
[»] chr2 (1 HSPs)
chr2 (199-276)||(3072391-3072468)
[»] chr4 (2 HSPs)
chr4 (135-175)||(27414295-27414335)
chr4 (115-175)||(27600642-27600702)


Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 38041930 - 38042197
Alignment:
Q  16 ggctatttagcggtgtatgttggagaggaaatgaagaggttcttgattccagtagcattcttgaatgagcctttgtttcaagaattgttgagccaagctg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38041930 ggctatttagcggtgtatgttggagaggaaatgaagaggttcttgattccagtagcattcttgaatgagcctttgtttcaagaattgttgagccaagctg 38042029  T
Q  116 aagaggaattcggttactgtcatcaaatgggtggtcttacaattccgtgcaaggaagatgtgtttttacatacaacttcccgcttgaacggcctataatt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38042030 aagaggaattcggttactgtcatcaaatgggtggtcttacaattccgtgcaaggaagatgtgtttttacgtacaacttcccgcttgaacggcctataatt 38042129  T
Q  216 aaattcttacggcaaaaaagtcatatgatcgataacatagcacagtaggattgactagttgtaacaac 283  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  38042130 aaattcttacggcaaaaaagtcatatgatcgataacatcgcacagtaggattgactagttgtgacaac 38042197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 50906976 - 50906759
Alignment:
Q  16 ggctatttagcggtgtatgtt-ggagaggaaatgaagaggttcttgattccagtagcattcttgaatgagcctttgtttcaagaattgttgagccaagct 114  Q
    |||||||| |||||||||||| ||||||||||   ||||||| |||||||||||  ||||||||||||||||||  ||||||||||||||| | |||||     
T  50906976 ggctattttgcggtgtatgttaggagaggaaaatgagaggtttttgattccagtgtcattcttgaatgagccttcatttcaagaattgttgcgtcaagcc 50906877  T
Q  115 gaagaggaattcggttactgtcatcaaatgggtggtcttacaattccgtgcaaggaagatgtgtttttacatacaacttcccgcttgaacggcctataat 214  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  50906876 gaagaggaattccgttactgtcatccaatgggtggtcttacaattccgtgcaaggaagatgtgtttttacatacaacttcccgcttgaacggcctataaa 50906777  T
Q  215 taaattcttacggcaaaa 232  Q
    ||||||| ||| ||||||    
T  50906776 taaattcataccgcaaaa 50906759  T

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Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 28 - 215
Target Start/End: Original strand, 50913498 - 50913685
Alignment:
Q  28 gtgtatgttggagaggaaatgaagaggttcttgattccagtagcattcttgaatgagcctttgtttcaagaattgttgagccaagctgaagaggaattcg 127  Q
    ||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||| | |||||||||||||||||||| |    
T  50913498 gtgtatgttggagagaaaatgaagaggttcttgattccaatatcattcttgaatgagcctttatttcaagaattgcttagccaagctgaagaggaatttg 50913597  T
Q  128 gttactgtcatcaaatgggtggtcttacaattccgtgcaaggaagatgtgtttttacatacaacttcccgcttgaacggcctataatt 215  Q
    | |||||||||| ||||||||||||||||||||| |||||||||||||| || ||||||||| |||| | ||||||| | ||||||||    
T  50913598 gctactgtcatccaatgggtggtcttacaattccctgcaaggaagatgtcttcttacatacagcttctcacttgaacagactataatt 50913685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 25 - 217
Target Start/End: Original strand, 38035054 - 38035246
Alignment:
Q  25 gcggtgtatgttggagaggaaatgaagaggttcttgattccagtagcattcttgaatgagcctttgtttcaagaattgttgagccaagctgaagaggaat 124  Q
    |||||||||||||||||| |||||   |||||| |||||||| || ||||||||||||||||||| |||||||||||| | |||||||||||||||||||    
T  38035054 gcggtgtatgttggagagaaaatgcgaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgcttagccaagctgaagaggaat 38035153  T
Q  125 tcggttactgtcatcaaatgggtggtcttacaattccgtgcaaggaagatgtgtttttacatacaacttcccgcttgaacggcctataattaa 217  Q
    ||||||| ||||||| |||||||||||| |||||||| ||||||||||| || || ||||||||| |||| | ||||||||| ||||||||||    
T  38035154 tcggttattgtcatccaatgggtggtctcacaattccctgcaaggaagacgtattcttacatacagcttctctcttgaacggtctataattaa 38035246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 28 - 194
Target Start/End: Original strand, 38027457 - 38027623
Alignment:
Q  28 gtgtatgttggagaggaaatgaagaggttcttgattccagtagcattcttgaatgagcctttgtttcaagaattgttgagccaagctgaagaggaattcg 127  Q
    ||||||||||||||| ||||||  |||||  ||||||| ||| ||||||||||||||||||| |||||||||||| | |||||| |||||||||||||||    
T  38027457 gtgtatgttggagagaaaatgagaaggtttatgattcccgtatcattcttgaatgagcctttatttcaagaattgcttagccaatctgaagaggaattcg 38027556  T
Q  128 gttactgtcatcaaatgggtggtcttacaattccgtgcaaggaagatgtgtttttacatacaacttc 194  Q
    |||| ||||||| ||||||||||||||||||||| |||||||||||  |||||||| ||||||||||    
T  38027557 gttattgtcatccaatgggtggtcttacaattccctgcaaggaagacatgtttttatatacaacttc 38027623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 28 - 194
Target Start/End: Original strand, 38038549 - 38038715
Alignment:
Q  28 gtgtatgttggagaggaaatgaagaggttcttgattccagtagcattcttgaatgagcctttgtttcaagaattgttgagccaagctgaagaggaattcg 127  Q
    ||||||||||||||| ||||||  |||||| |||||||| || ||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  38038549 gtgtatgttggagagaaaatgagaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgcttagccaagctgaagaggaattcg 38038648  T
Q  128 gttactgtcatcaaatgggtggtcttacaattccgtgcaaggaagatgtgtttttacatacaacttc 194  Q
    |||| ||||||| |||||| |||||||||||||| |||||||||||  |||| ||||||||| ||||    
T  38038649 gttattgtcatccaatgggaggtcttacaattccctgcaaggaagacatgttcttacatacagcttc 38038715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 28 - 194
Target Start/End: Original strand, 38032284 - 38032450
Alignment:
Q  28 gtgtatgttggagaggaaatgaagaggttcttgattccagtagcattcttgaatgagcctttgtttcaagaattgttgagccaagctgaagaggaattcg 127  Q
    ||||||||||||||| ||||||  |||||  ||||||||||| ||||||||||||||||||| |||||||||||| | |||||| |||||||||||||||    
T  38032284 gtgtatgttggagagaaaatgagaaggtttatgattccagtatcattcttgaatgagcctttatttcaagaattgcttagccaatctgaagaggaattcg 38032383  T
Q  128 gttactgtcatcaaatgggtggtcttacaattccgtgcaaggaagatgtgtttttacatacaacttc 194  Q
    |||| ||||||| |||||| |||||||||||||| ||||| |||||  |||| ||||||||||||||    
T  38032384 gttattgtcatccaatgggcggtcttacaattccctgcaaagaagacatgttcttacatacaacttc 38032450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 122 - 276
Target Start/End: Original strand, 55086775 - 55086929
Alignment:
Q  122 aattcggttactgtcatcaaatgggtggtcttacaattccgtgcaaggaagatgtgtttttacatacaacttcccgcttgaacggcctataattaaattc 221  Q
    ||||| |||||||||||| |||||||||||||||||||   ||||| |||||||| |||||||||||||||||| ||||||| ||||||| |||||||||    
T  55086775 aattcagttactgtcatccaatgggtggtcttacaattagctgcaaagaagatgtatttttacatacaacttcctgcttgaatggcctatgattaaattc 55086874  T
Q  222 ttacggcaaaaaagtcatatgatcgataacatagcacagtaggattgactagttg 276  Q
     ||  ||||||||||||||||| | ||| |||   |||||| |||||||||||||    
T  55086875 atattgcaaaaaagtcatatgaacaatagcattagacagtacgattgactagttg 55086929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 31 - 156
Target Start/End: Complemental strand, 55082840 - 55082716
Alignment:
Q  31 tatgttggagaggaaatgaagaggttcttgattccagtagcattcttgaatgagcctttgtttcaagaattgttgagccaagctgaagaggaattcggtt 130  Q
    |||||||||||| |||||||||||||| ||||||||||| |||| |||||||||||||| |||||||||||| | |||||||| |||||||| || ||||    
T  55082840 tatgttggagagaaaatgaagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttggtt 55082741  T
Q  131 actgtcatcaaatgggtggtcttaca 156  Q
    |||||||||  |||||||||||||||    
T  55082740 actgtcatc-catgggtggtcttaca 55082716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 55082720 - 55082684
Alignment:
Q  181 ttacatacaacttcccgcttgaacggcctataattaa 217  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  55082720 ttacatacaacttctcgcttgaacggccaataattaa 55082684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 28 - 194
Target Start/End: Original strand, 21608259 - 21608425
Alignment:
Q  28 gtgtatgttggagaggaaatgaagaggttcttgattccagtagcattcttgaatgagcctttgtttcaagaattgttgagccaagctgaagaggaattcg 127  Q
    ||||||||||||||| ||||||  |||||| |||||||| || ||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||    
T  21608259 gtgtatgttggagagaaaatgagaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgcttagccaagctgaagaggaattcg 21608358  T
Q  128 gttactgtcatcaaatgggtggtcttacaattccgtgcaaggaagatgtgtttttacatacaacttc 194  Q
    |||| ||||||| |||||| |||||||||||||| |||||||||||  |||| ||||||||| ||||    
T  21608359 gttattgtcatccaatgggaggtcttacaattccctgcaaggaagacatgttcttacatacagcttc 21608425  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 276
Target Start/End: Original strand, 3072391 - 3072468
Alignment:
Q  199 ttgaacggcctataattaaattcttacggcaaaaaagtcatatgatcgataacatagcacagtaggattgactagttg 276  Q
    |||||||||||| |||||||| |  || ||||||||||||||||| ||| |||||  |||||||||||| ||||||||    
T  3072391 ttgaacggcctagaattaaatccacactgcaaaaaagtcatatgaacgaaaacattacacagtaggattaactagttg 3072468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 27414335 - 27414295
Alignment:
Q  135 tcatcaaatgggtggtcttacaattccgtgcaaggaagatg 175  Q
    ||||| ||||||||||||||||||||||||||  |||||||    
T  27414335 tcatccaatgggtggtcttacaattccgtgcagtgaagatg 27414295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 27600642 - 27600702
Alignment:
Q  115 gaagaggaattcggttactgtcatcaaatgggtggtcttacaattccgtgcaaggaagatg 175  Q
    ||||| ||||| ||||||  ||||| |||||||||||| |||||||| ||||| |||||||    
T  27600642 gaagaagaatttggttacaatcatccaatgggtggtctcacaattccttgcaaagaagatg 27600702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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