View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10791_high_3 (Length: 229)
Name: NF10791_high_3
Description: NF10791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10791_high_3 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 21634174 - 21633952
Alignment:
| Q |
7 |
ctactgacttgttttcaaaattctatcatgtaccaattaagttgaaaatatttaggttaaagaaaggtttttctttgaagatttatttgtttcgagtttt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21634174 |
ctactgacttgttttcaaaattctatcatgtaccaattaagttgaaaatatttaggttaaagaaaggtttttctttgaagatttatttgtttcgagtttt |
21634075 |
T |
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| Q |
107 |
attgcatgttttcgtaatatataccaattttgcatcaccatatctactagtatgtaatagacattatccataaaatcagtgcatgaattgtgtttgtgca |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21634074 |
gttgcatgttttcgtaatatataccaattttgcatcaccatatctactagtatgtaatagacattatccataaaatcagtgcatgaattgtgtttgtgca |
21633975 |
T |
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| Q |
207 |
atgcaagtatttcaggtgacaca |
229 |
Q |
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||||||||||||||||||||||| |
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| T |
21633974 |
atgcaagtatttcaggtgacaca |
21633952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 38042513 - 38042291
Alignment:
| Q |
7 |
ctactgacttgttttcaaaattctatcatgtaccaattaagttgaaaatatttaggttaaagaaaggtttttctttgaagatttatttgtttcgagtttt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38042513 |
ctactgacttgttttcaaaattctatcatgtaccaattaagttgaaaatatttaggttaaagaaaggtttttctttgaagatttatttgtttcgagtttt |
38042414 |
T |
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| Q |
107 |
attgcatgttttcgtaatatataccaattttgcatcaccatatctactagtatgtaatagacattatccataaaatcagtgcatgaattgtgtttgtgca |
206 |
Q |
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| T |
38042413 |
gttgcatgttttcgtaatatataccaattttgcatcaccatatctactagtatgtaatagacattatccataaaatcagtgcatgaattgtgtttgtgca |
38042314 |
T |
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| Q |
207 |
atgcaagtatttcaggtgacaca |
229 |
Q |
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| T |
38042313 |
atgcaagtatttcaggtgacaca |
38042291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 50906377 - 50906599
Alignment:
| Q |
7 |
ctactgacttgttttcaaaattctatcatgtaccaattaagttgaaaatattta--ggttaaagaaaggtttttctttgaagatttatttgtttcgagtt |
104 |
Q |
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|||||| | ||||||||||||| ||| ||| ||||| | ||||||||| |||| ||||||||||||| |||||||| | ||||||||||||| |||| |
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| T |
50906377 |
ctactggcctgttttcaaaattatattatgagccaatcaggttgaaaatctttataggttaaagaaagggttttctttagatatttatttgtttcaagtt |
50906476 |
T |
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| Q |
105 |
ttattgcatgttttcgtaatatataccaattttgcatcaccatatctactagtatgtaatagacattatccataaaatcagtgcatgaattgtgtttgtg |
204 |
Q |
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| T |
50906477 |
ttgttgtatatccttgtaacatataccaattttgcatcaccatatcaatgagtatgtaacaaacagtatccataaaatcagtggatg--gcgtgtttgtg |
50906574 |
T |
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| Q |
205 |
caatgcaagtatttcaggtgacaca |
229 |
Q |
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| T |
50906575 |
caatgcaagtatttcaggtgacaca |
50906599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 3072660 - 3072587
Alignment:
| Q |
156 |
gtatgtaatagacattatccataaaatcagtgcatgaattgtgtttgtgcaatgcaagtatttcaggtgacaca |
229 |
Q |
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|||||||||||||| | ||||| ||||||||| || | |||||||||||||||||||||||||||||||||||| |
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| T |
3072660 |
gtatgtaatagacagtgtccattaaatcagtgtataacttgtgtttgtgcaatgcaagtatttcaggtgacaca |
3072587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 3072765 - 3072655
Alignment:
| Q |
7 |
ctactgacttgttttcaaaattctatcatgtaccaattaagttgaaaatattta--ggttaaagaaaggtttttctttgaagatttatttgtttcgagtt |
104 |
Q |
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|||||||||||||| ||||||||| |||||| | || ||||||||||| ||| |||||||||||||||||||| | |||| || ||||||||||||| |
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| T |
3072765 |
ctactgacttgtttacaaaattctctcatgtgtctatcaagttgaaaatcattacaggttaaagaaaggtttttctgtaaagacttgtttgtttcgagtt |
3072666 |
T |
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| Q |
105 |
ttattgcatgt |
115 |
Q |
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| T |
3072665 |
ttgttgtatgt |
3072655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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