View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10791_low_1 (Length: 836)
Name: NF10791_low_1
Description: NF10791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10791_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 641; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 130 - 817
Target Start/End: Complemental strand, 5639311 - 5638622
Alignment:
| Q |
130 |
ttgttcttcaattttgttaatagattgggattttcctcaaggacgtcaatagctgtaatggcagcacttgcaagatatggaggtaaagaagcagaaaaga |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5639311 |
ttgttcttcaattttgttaatagattgggattttcctcaaggacgtcaatagctgtaatggcagcacttgcaagatatggaggtaaagaagcagaaaaga |
5639212 |
T |
|
| Q |
230 |
catagccagagctactcaatcgctgccaaggttgaaaacatacagatattagagcagggaaatggatgagaaggcatcatcaaccaatcacttggttatg |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5639211 |
catagccagagctactcaatcgctgccaaggttgaaaacatacagatattagagcagggaaatggatgagaaggcatcatcaaccaatcacttggttatg |
5639112 |
T |
|
| Q |
330 |
cacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaaggaaacgtgggggaaaaaatgaaagaagttccgtgaaaaac |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5639111 |
cacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaaggaaacgtgggggaaaaaatgaaagaagttccgtgaaaaac |
5639012 |
T |
|
| Q |
430 |
actccctctgaactcaaatttaagtaaaattaactaaatacgtactaagtaagaatattagttaagcttgcttatttttcttggtgcaataagaaaattg |
529 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5639011 |
actccctccgaactcaaatttaagtaaaattaactaaatacgtactaattaagaatattagttaaccttgcttatttttcttggtgcaataagaaaattg |
5638912 |
T |
|
| Q |
530 |
cattctccgaactatcattctc-tcactaaatttcctttgaaacttgtttcatgagagcattaattgagtggtgtttaacactaattgaaatataacagt |
628 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5638911 |
cattctccgaactatcattctcttcactaaatttcctttgaaacttgtttcatgagagcattaattgagtggtgtttaacactaattgaaatataacagt |
5638812 |
T |
|
| Q |
629 |
aatccagtaaaattaattagaattttcttatatattatggaccacaaaccatgacta-nnnnnnnacttaaatttgagtttggaggaagtaaattcttaa |
727 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
5638811 |
aatccagtaaaattaattagaattttcttatatattatggaccacaaaccatgactattttttttacttaaatttgagtttggaggaagtaaattcttaa |
5638712 |
T |
|
| Q |
728 |
tttccacatttacaatctttcttctcttttagtgtttcagtatacatggaaatccaagaaggttatgaacagtatcacatatgacactac |
817 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5638711 |
tttccacatttacaatctttcttctcttttagtgtttcagtatacatggaaatccaagaaggttatgaacagtatcacatatgacactac |
5638622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 77 - 390
Target Start/End: Complemental strand, 22965574 - 22965261
Alignment:
| Q |
77 |
attcatgacagtagcaatgagatcaaaccctacctttccataaaacatcaatgttgttcttcaattttgttaatagattgggattttcctcaaggacgtc |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| ||||||| |||| |||||||||||||||||||||||||||||| |
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|
| T |
22965574 |
attcatgacagtagcaatgagatcaaaccctccctctccataacacatcaatgttgctcttcaactttgctaatagattgggattttcctcaaggacgtc |
22965475 |
T |
|
| Q |
177 |
aatagctgtaatggcagcacttgcaagatatggaggtaaagaagcagaaaagacatagccagagctactcaatcgctgccaaggttgaaaacatacagat |
276 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
22965474 |
aatagttgtaatggcagcacttgcaagatatggaggcaaagaagcagaaaagacatagccagagctactcaatcgctgccaaatttgaaaacataaagat |
22965375 |
T |
|
| Q |
277 |
attagagcagggaaatggatgagaaggcatcatcaaccaatcacttggttatgcacatcgctttatcatgcaaattttatagttcagacctgcaaattca |
376 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||| | |||||||||||| ||| ||||||||||||||||||||| |||||||||||||| |
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|
| T |
22965374 |
attagagaagggaaatggatgagaaggcattatcaaccaagatgtaagttatgcacatcacttaatcatgcaaattttatagttcggacctgcaaattca |
22965275 |
T |
|
| Q |
377 |
ggtattaatgaagg |
390 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
22965274 |
ggtattaatgaagg |
22965261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 5651254 - 5651139
Alignment:
| Q |
18 |
acatcaattcaaactgttgtgtgcaagccaaattgtggacactactgcgatacagttccattcatgacagtagcaatgagatcaaaccctacctttccat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5651254 |
acatcaattcaaactgttgtgtgcaagccaaattgtggacactgctgcgatacagttccattcatgacagtagcaatgagatcaaaccctacctttccat |
5651155 |
T |
|
| Q |
118 |
aaaacatcaatgttgt |
133 |
Q |
| |
|
||||||||||| |||| |
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|
| T |
5651154 |
aaaacatcaatattgt |
5651139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 77 - 388
Target Start/End: Original strand, 38954349 - 38954654
Alignment:
| Q |
77 |
attcatgacagtagcaatgagatcaaaccctacctttccataaaacatcaatgttgttcttcaattttgttaatagattgggattttcctcaaggacgtc |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |||| |||||||||||||||||||||||||||||| |
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|
| T |
38954349 |
attcatgacagtagcaatgagatcaaaccctccctttccataacacatcaatgttgctcttcaactttgctaatagattgggattttcctcaaggacgtc |
38954448 |
T |
|
| Q |
177 |
aatagctgtaatggcagcacttgcaagatatggaggtaaagaagcagaaaagacatagccagagctactcaatcgctgccaaggttgaaaacatacagat |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
38954449 |
aatagctgtaatggcagcacttgcaagatatggaggcaaagaagcagaaaagacatagccaga------atatcgctgccaaatttgaaaacataaagat |
38954542 |
T |
|
| Q |
277 |
attagagcagggaaatggatgagaaggcatcatcaaccaatcacttggttatgcacatcgctttatcatgcaaattttatagttcagacctgcaaattca |
376 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||| | |||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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|
| T |
38954543 |
attagagaagggaaatggatgagaaggcattatcaaccaagatgtaagttatgcacatcgcttaatcatgcaaattttatagtttggacctgcaaattca |
38954642 |
T |
|
| Q |
377 |
ggtattaatgaa |
388 |
Q |
| |
|
|||||||||||| |
|
|
| T |
38954643 |
ggtattaatgaa |
38954654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 6e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 67 - 269
Target Start/End: Original strand, 21422829 - 21423032
Alignment:
| Q |
67 |
atacagttccattcatgacagtagcaa-tgagatcaaaccctacctttccataaaacatcaatgttgttcttcaattttgttaatagattgggattttcc |
165 |
Q |
| |
|
||||| ||||||| |||| ||||||| ||| |||||| ||||||||||||||| ||| |||||||||||||||| |||||||||| |||||||||||| |
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|
| T |
21422829 |
atacaattccatttatgaaagtagcaggtgatatcaaagcctacctttccataacacagcaatgttgttcttcaactttgttaatacattgggattttcg |
21422928 |
T |
|
| Q |
166 |
tcaaggacgtcaatagctgtaatggcagcacttgcaagatatggaggtaaagaagcagaaaagacatagccagagctactcaatcgctgccaaggttgaa |
265 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||| |
|
|
| T |
21422929 |
tcaaggacatcaatagctgtaattgcagcgcttgcaagatatggaggcaaagaagcagaaaagacgtagccagagctactcaatcgctgtaaaagttgaa |
21423028 |
T |
|
| Q |
266 |
aaca |
269 |
Q |
| |
|
|||| |
|
|
| T |
21423029 |
aaca |
21423032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 98 - 254
Target Start/End: Original strand, 30634075 - 30634231
Alignment:
| Q |
98 |
atcaaaccctacctttccataaaacatcaatgttgttcttcaattttgttaatagattgggattttcctcaaggacgtcaatagctgtaatggcagcact |
197 |
Q |
| |
|
|||||| ||||||||||||||| ||| |||||||||||||||| |||||||||| |||||||||||| |||||||| |||||||||||||| ||||| || |
|
|
| T |
30634075 |
atcaaagcctacctttccataacacagcaatgttgttcttcaactttgttaatatattgggattttcgtcaaggacatcaatagctgtaattgcagcgct |
30634174 |
T |
|
| Q |
198 |
tgcaagatatggaggtaaagaagcagaaaagacatagccagagctactcaatcgctg |
254 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
30634175 |
tgcaagatatggaggcaaagaagcagaaaagacgtagccagagctgctcaatcgctg |
30634231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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