View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10791_low_12 (Length: 203)

Name: NF10791_low_12
Description: NF10791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10791_low_12
NF10791_low_12
[»] chr5 (10 HSPs)
chr5 (96-185)||(3299482-3299571)
chr5 (96-185)||(3392375-3392464)
chr5 (96-185)||(1849914-1850003)
chr5 (96-185)||(1163736-1163822)
chr5 (96-185)||(38987654-38987740)
chr5 (96-185)||(39726367-39726453)
chr5 (96-185)||(39879763-39879849)
chr5 (96-185)||(40418232-40418318)
chr5 (96-185)||(39168795-39168881)
chr5 (97-185)||(39399809-39399894)
[»] chr4 (1 HSPs)
chr4 (96-185)||(25912341-25912427)


Alignment Details
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 3299482 - 3299571
Alignment:
Q  96 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatct 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299482 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatct 3299571  T

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Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 3392375 - 3392464
Alignment:
Q  96 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatct 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392375 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatct 3392464  T

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Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 1849914 - 1850003
Alignment:
Q  96 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatct 185  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1849914 caaaaaatatcgtttagctaatgccatagttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaggactcatct 1850003  T

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Target: chr5; HSP #4
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 96 - 185
Target Start/End: Complemental strand, 1163822 - 1163736
Alignment:
Q  96 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatct 185  Q
    ||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||   ||||||||||||| |||||||||    
T  1163822 caaaaaatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcac---acttttcaaatcaggactcatct 1163736  T

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Target: chr5; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 38987654 - 38987740
Alignment:
Q  96 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatct 185  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| ||||   |||||| |||||||||||||||||| |||||||||    
T  38987654 caaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactgga---aataatgacacaacttttcaaatcaggactcatct 38987740  T

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Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 39726367 - 39726453
Alignment:
Q  96 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatct 185  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| ||||   |||||| |||||||||||||||||| |||||||||    
T  39726367 caaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactgga---aataatgacacaacttttcaaatcaggactcatct 39726453  T

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Target: chr5; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 39879763 - 39879849
Alignment:
Q  96 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatct 185  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||| ||||   |||||| |||||||||||||||||| |||||||||    
T  39879763 caaaaaatatcgtttagctgatgctgtggttgctcgtgtgaaagatactgga---aataatgacacaacttttcaaatcaggactcatct 39879849  T

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Target: chr5; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 40418232 - 40418318
Alignment:
Q  96 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatct 185  Q
    |||||||||| |||||||||||||  ||||||||||||||||||||||||||   |||||| |||||||||||||||||| |||||||||    
T  40418232 caaaaaatattgtttagctgatgctgtggttgctcgtgtgaaagatattgga---aataatgacacaacttttcaaatcaggactcatct 40418318  T

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Target: chr5; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 39168795 - 39168881
Alignment:
Q  96 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatct 185  Q
    |||||||||||| |||||||||||| |||||||||||||| ||||| |||||   |||||| ||||||||||||||||||| ||||||||    
T  39168795 caaaaaatatcggttagctgatgccgtggttgctcgtgtggaagattttgga---aataatgacacaacttttcaaatcaaaactcatct 39168881  T

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Target: chr5; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 97 - 185
Target Start/End: Original strand, 39399809 - 39399894
Alignment:
Q  97 aaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatct 185  Q
    |||||||| ||||||||||||||| |||||||||||||| || || |||||   |||||| |||||||||||||||||| |||||||||    
T  39399809 aaaaaataccgtttagctgatgccgtggttgctcgtgtggaaaattttgga---aataatgacacaacttttcaaatcaggactcatct 39399894  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 96 - 185
Target Start/End: Complemental strand, 25912427 - 25912341
Alignment:
Q  96 caaaaaatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatct 185  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||||   |||| |||||||||||||||||| |||||||||    
T  25912427 caaaaaatatcgtttagctgatgatgtggttgctcgtgtgaaagatattggaaa---taatgacacaacttttcaaatcaggactcatct 25912341  T

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