View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10791_low_13 (Length: 202)

Name: NF10791_low_13
Description: NF10791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10791_low_13
NF10791_low_13
[»] chr6 (2 HSPs)
chr6 (58-115)||(31072677-31072735)
chr6 (58-115)||(31024780-31024837)
[»] chr8 (1 HSPs)
chr8 (58-115)||(33559833-33559890)


Alignment Details
Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 31072735 - 31072677
Alignment:
Q  58 cctcttctcgttttaaccaaattttgaacaa-tttacaattttctatgcttcattcatt 115  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  31072735 cctcttctcgttttaaacaaattttgaacaaatttacaattttctatgcttcattcatt 31072677  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 31024837 - 31024780
Alignment:
Q  58 cctcttctcgttttaaccaaattttgaacaatttacaattttctatgcttcattcatt 115  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||    
T  31024837 cctcttctcattttaaccaatttttgaacaatttacaattttctatacttcattcatt 31024780  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 33559890 - 33559833
Alignment:
Q  58 cctcttctcgttttaaccaaattttgaacaatttacaattttctatgcttcattcatt 115  Q
    ||||||||||| ||| |||||| |||||| |||||||||||||| |||||||||||||    
T  33559890 cctcttctcgtcttacccaaatattgaaccatttacaattttctctgcttcattcatt 33559833  T

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