View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10791_low_3 (Length: 374)
Name: NF10791_low_3
Description: NF10791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10791_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 364
Target Start/End: Original strand, 53006081 - 53006428
Alignment:
| Q |
17 |
actaataaatgagtagatttgtcatttgatgtctaccttacaattcggatcattgtgtataattagctacaatgaaaccatgttatcttatccatcagtg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53006081 |
actaataaatgagtagatttgtcatttgatgtctaccttacaattcggatcattgtgtataattagctacaatgaaaccatgttatcttatccatcagtg |
53006180 |
T |
|
| Q |
117 |
catctaatatcttaaattgcggtgactgttaaaccaagattgcatttacaaggcacacaatgcattcaaataaactttgcttatttctcctggaaaggaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
53006181 |
catctaatatcttaaattgcggtgactgttaaaccaagattgcatttacaaggcacacaatgcattcaaataaactttgcctatttctcctggaaaggaa |
53006280 |
T |
|
| Q |
217 |
atttttcgacatcttactgtagtcatttcataactgatctctagttagttattattcaaatcataattctatgtttccctatgtagcggcaactatccaa |
316 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
53006281 |
atttttcgacatcttattgtagtcatttcataactgatctctagttagttattattcaaatcataattctatgtttccctatgtagcggcgactatccaa |
53006380 |
T |
|
| Q |
317 |
aatgattcagatattcgtttcgaacacctattcgaaaactaatctgtg |
364 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
53006381 |
aatgattcagatattcgttttgaacacctatttgaaaactaatctgtg |
53006428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University