View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10791_low_4 (Length: 349)
Name: NF10791_low_4
Description: NF10791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10791_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 54714869 - 54714534
Alignment:
| Q |
1 |
tgtgaatttatttcaatcaatatatatactttcagttcacaatcatagttgtgatattccttcacattgcatggtctcaaatcgagtatggaatggttga |
100 |
Q |
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| T |
54714869 |
tgtgaatttatttcaatcaatatatatactttcagttcacaatcatagctgtgat---ccttcacattgcctggtctcaaatcgagtatggaatggttga |
54714773 |
T |
|
| Q |
101 |
catgcatgcatcaaaccaacaaatcactcgagaatccggcaaatggatacagatatcaatatcatctcacataaacacatttatttgatttgatacgtat |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
54714772 |
catgcacgcatcaaaccaacaaatcactcgagaatccggcaaatggatacagatatcaatatcatctcacataaacacatttatttgatttgatatatat |
54714673 |
T |
|
| Q |
201 |
--------atagatagatataaataacacacaaaccatggccgcaatctctgatcaaggaaggatttcagcgttagggttaccgcttttagccacaatgg |
292 |
Q |
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| T |
54714672 |
atatatagatagatagatataaataacacacaaaccatggccgcaatctctgatcatggaaggatttcagcgttagggttaccgcttttagccacaatgg |
54714573 |
T |
|
| Q |
293 |
aatcgcgaccaatgttattacatattttagtgtaccttg |
331 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
54714572 |
aatcacgaccaatgttattacatattttagtgtaccttg |
54714534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 54680845 - 54680649
Alignment:
| Q |
1 |
tgtgaatttatttcaatcaatatatatactttcagttcacaatcatagttgtgatattccttcacattgcatggtctcaaatcgagtatggaatggttga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54680845 |
tgtgaatttatttcaatcaatatatatactttcagttcacaatcatagttgtgat---ccttcacattgcatggtctcaaatcgagtatggaatgattga |
54680749 |
T |
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| Q |
101 |
cat--gcatgcatcaaaccaacaaatcactcgagaatccggcaaatggatacagatatcaatatcatctcacataaacacatttatttgatttgatacgt |
198 |
Q |
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| T |
54680748 |
catatgcatgcatcaaaccaacaaatcactcgagaatccggtaaatggatacagatatcaatatcatctcacataaatacatttatttgatttgatacgt |
54680649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 58 - 293
Target Start/End: Complemental strand, 54721740 - 54721516
Alignment:
| Q |
58 |
tccttcacattgcatggtctcaaatcgagtatggaa-tggttgacatgcatgcatcaaaccaacaaatcactcgagaatccggcaaatggatacagatat |
156 |
Q |
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||||||||| ||| |||| || |||||||||||||| |||||||||||| |||||||||||| ||||| ||||||||||||||||| |||||||||| |
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| T |
54721740 |
tccttcacaatgcctggtttcgaatcgagtatggaaatggttgacatgcgtgcatcaaacca-caaattactcgagaatccggcaataaaatacagatat |
54721642 |
T |
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| Q |
157 |
caatatcatctcacataaacacatttatttgatttgatacgtatatagatagatataaataacacacaaaccatggccgcaatctctgatcaaggaagga |
256 |
Q |
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|| || |||||| ||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54721641 |
ca------tcacacatacacacatttatttgat-----acatatatagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaagga |
54721553 |
T |
|
| Q |
257 |
tttcagcgttagggttaccgcttttagccacaatgga |
293 |
Q |
| |
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| T |
54721552 |
tttcagcgttagggttaccgctcttagccacaatgga |
54721516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 58 - 293
Target Start/End: Complemental strand, 5297893 - 5297669
Alignment:
| Q |
58 |
tccttcacattgcatggtctcaaatcgagtatggaa-tggttgacatgcatgcatcaaaccaacaaatcactcgagaatccggcaaatggatacagatat |
156 |
Q |
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||||||||| ||| |||| ||||||||||||| ||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| |
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| T |
5297893 |
tccttcacaatgcctggtttcaaatcgagtatcgaaatggttgacatgcatgcatcaaacca-caaattactcgagaatccggcaataaagtacagatat |
5297795 |
T |
|
| Q |
157 |
caatatcatctcacataaacacatttatttgatttgatacgtatatagatagatataaataacacacaaaccatggccgcaatctctgatcaaggaagga |
256 |
Q |
| |
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|| || |||||| ||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5297794 |
ca------tcacacatacacacatttatttgat-----acatatatagatagataaaaataacacacaaaccatggccgcaatctctgatcaaggaagga |
5297706 |
T |
|
| Q |
257 |
tttcagcgttagggttaccgcttttagccacaatgga |
293 |
Q |
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|||||||||||||||||||||| |||||||||||||| |
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| T |
5297705 |
tttcagcgttagggttaccgctcttagccacaatgga |
5297669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 5398892 - 5398845
Alignment:
| Q |
214 |
aataacacacaaaccatggccgcaatctctgatcaaggaaggatttca |
261 |
Q |
| |
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||||||||||||||||||||| |||||||| |||| |||||||||||| |
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| T |
5398892 |
aataacacacaaaccatggccacaatctctcatcatggaaggatttca |
5398845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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