View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10791_low_6 (Length: 255)
Name: NF10791_low_6
Description: NF10791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10791_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 94 - 246
Target Start/End: Complemental strand, 25886679 - 25886527
Alignment:
| Q |
94 |
ttttaaccatgtcttctacttcatcatggctaacttctccttcatgcacccttttacctatagattcatcttcctctacaccacaactcatacttcaatg |
193 |
Q |
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| T |
25886679 |
ttttaaccatgtcttcttcttcttcatggctaacttctccttcatgcacccttttacctatagattcatcttcctctacaccacaactcatacttcaatg |
25886580 |
T |
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| Q |
194 |
gttaacctttcttttcctatctccatgtcctcaaagacttctcctctctgctc |
246 |
Q |
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| T |
25886579 |
gttaacctttcttttcctatctccatgtcctcaaagacttctcctttctgctc |
25886527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 93 - 246
Target Start/End: Complemental strand, 44350525 - 44350374
Alignment:
| Q |
93 |
cttttaaccatgtcttctacttcatcatggctaacttctccttcatgcacccttttacctatagattcatcttcctctacaccacaactcatacttcaat |
192 |
Q |
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| T |
44350525 |
cttttaaccatgtcttcttcttcat---ggctaacttctccttcatgcacccttttacctacagatccatcttcctctacaccacaactcatacttcaat |
44350429 |
T |
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| Q |
193 |
ggttaacctttcttttcctatct-ccatgtcctcaaagacttctcctctctgctc |
246 |
Q |
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| T |
44350428 |
ggttaacctttcttttcctatctgaaatgtcctcaaagacttctcctttctgctc |
44350374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 14271147 - 14271003
Alignment:
| Q |
18 |
gtatcaaacttgttaagttacatattttacgcaacatataacatgaaaccatattaattatcatcacgttataatcttttaaccatgtcttctacttcat |
117 |
Q |
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| T |
14271147 |
gtatcaaacttgtta-gttacatatttcacacaacatataacatgaaaccatattaattatcatcacgttataatcttttaaccatgtcttctacttcat |
14271049 |
T |
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| Q |
118 |
catggctaacttctccttcatgcacccttttacctatagattcatc |
163 |
Q |
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| T |
14271048 |
catggctaacttctccttcatgcacccttttacctatacattcatc |
14271003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 60 - 235
Target Start/End: Complemental strand, 14322040 - 14321868
Alignment:
| Q |
60 |
atgaaaccatattaattatcatcacgttataatcttttaaccatgtcttctacttcatcatggctaacttctccttcatgcacccttttacctatagatt |
159 |
Q |
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| T |
14322040 |
atgaaaccttatcagttttcatcacataataatcttttaacaatgtct---acttcttcatggctaacttctccttcatgcacccttttacctgtagatt |
14321944 |
T |
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| Q |
160 |
catcttcctctacaccacaactcatacttcaatggttaacctttcttttcctatctccatgtcctcaaagacttct |
235 |
Q |
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| T |
14321943 |
catcttcctctacaccagaactcataattcaatggttaaggttcattttgctatctccatgtcctcagagacttct |
14321868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 105 - 246
Target Start/End: Complemental strand, 14283849 - 14283708
Alignment:
| Q |
105 |
tcttctacttcatcatggctaacttctccttcatgcacccttttacctatagattcatcttcctctacaccacaactcatacttcaatggttaacctttc |
204 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
14283849 |
tcttcttcttctgcatggctaacttctccttcatgcacccttttacctatacattcatcttcctctacaccacaattcatacttcaatggttaaggttca |
14283750 |
T |
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| Q |
205 |
ttttcctatctccatgtcctcaaagacttctcctctctgctc |
246 |
Q |
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| T |
14283749 |
ttttcctatctccttgtcctcagagacttcttctttctgctc |
14283708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 105 - 246
Target Start/End: Complemental strand, 14305607 - 14305466
Alignment:
| Q |
105 |
tcttctacttcatcatggctaacttctccttcatgcacccttttacctatagattcatcttcctctacaccacaactcatacttcaatggttaacctttc |
204 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||| |||| ||||||||||||| || |
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| T |
14305607 |
tcttctacttctgcatggctaacttctccttcatgcacccttttacctttacattcatcttcttctacaccacaattcattcttcaatggttaaggttca |
14305508 |
T |
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| Q |
205 |
ttttcctatctccatgtcctcaaagacttctcctctctgctc |
246 |
Q |
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||||||||||||| |||||||| |||||||| || ||||||| |
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| T |
14305507 |
ttttcctatctccttgtcctcagagacttctactttctgctc |
14305466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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