View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10792_1 (Length: 608)
Name: NF10792_1
Description: NF10792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10792_1 |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 581
Target Start/End: Original strand, 55941250 - 55941835
Alignment:
| Q |
1 |
taatacaaggaatgcgcaatctacaaatgcttgaggacctcataacacatgtacagttttcaatagaaactgttcggaaataccatcacaatttctctca |
100 |
Q |
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| T |
55941250 |
taatacaaggaatgcgcaatctacaaatgcttgaggacctcataacacatgtacagttttcaatagaaactgttcggaaataccatcacaatttctctca |
55941349 |
T |
|
| Q |
101 |
tttgtgaaatcaaaataagcactaagcnnnnnnnnnnnnnnnnnn-taataataagagaagtgagtagaaggataaagaataaaatttccacgtggaaaa |
199 |
Q |
| |
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| T |
55941350 |
tttgtgaaatcaaaataagcactaagcaaaaacaaacaaaaaataataataataagagaagtgagtagaaggataaagaataaaatttccacgtggaaaa |
55941449 |
T |
|
| Q |
200 |
ccttctcaatgtaaaaggatagaaccacgggattcaattcagtaaaatatttcgcatatagaaaagtaggattaaaataactctcctgatacaagagttt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55941450 |
ccttctcaatgtaaaaggatagaaccacgggattcaattcagtaaaatatttcgcatatagaaaagtaggattaaaataactctcctgatacaagagttt |
55941549 |
T |
|
| Q |
300 |
ctctctcaatctcactcaattcggatatgatataccatatctctcaactctcacaaatctaagatggatataaaactttcactcaaagaggattgctaga |
399 |
Q |
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| T |
55941550 |
ctctctcaatctcactcaattcggatatgatataccatatctctcaactctcacaaatctaagatggatataaaactttcactcaaagaggattgctaga |
55941649 |
T |
|
| Q |
400 |
acctctcac--tataactcttggataagatgacaaaactccgtgcaaattctcctatatatttataggagaagaacatgacttcctatatgaatgaagat |
497 |
Q |
| |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||| |
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| T |
55941650 |
acctctcgctatataactcttggataagatgacaaaactccgtgcaaattctcc----tatttataggagaagaacgtgacttcctacatgaatgaagat |
55941745 |
T |
|
| Q |
498 |
gtttcaagaatgta------aaatgtgtagtctcaagattcaaagatatttcaagaccttgaaatgtcaatacaatacccctttttcatg |
581 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55941746 |
gtttcaagaatgtaaatgttaaatgtgtagtctcaagattcaaagatatttcaagaccttgaaatgtcaatacaatacccctttttcatg |
55941835 |
T |
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