View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10792_2 (Length: 597)
Name: NF10792_2
Description: NF10792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10792_2 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 13 - 402
Target Start/End: Original strand, 32158335 - 32158724
Alignment:
| Q |
13 |
aaaataaactcaccacatagtatttcactggtttctctgacattggcatattatatgaacaggtgttagttagtgctatataaaatggaatgtcaaactc |
112 |
Q |
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| T |
32158335 |
aaaataaactcaccacatagtatttcactggtttctctgacattggcatattatatgaacaggtgttagttagtgctatataaaatggaatgtcaaactc |
32158434 |
T |
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| Q |
113 |
aaagtttttatttcataatatgaacacaacctactccaacatgttccaaagtatatacagacactgatgtagtaatgtttgtcttgtatgattttaaaaa |
212 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32158435 |
aaagttgttatttcataatatgaacacaacctactccaacatgttccaaagtatatacagacactgatgtagtaatgtttgtcttgtatgattttaaaaa |
32158534 |
T |
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| Q |
213 |
gattctttatgtttcctcgtggccagtttggcaataacattgccggtagttttggacatgggcacacattctcctgtatgtcgtgttacgtctctgtccc |
312 |
Q |
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| T |
32158535 |
gattctttatgtttcctcgtggccagtttggcaataacattgccggtagttttggacatgggcacacattctcctgtatgtcgtgttacgtctctgtccc |
32158634 |
T |
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| Q |
313 |
aagattgtaccttcttcttgaacaacattgtgggagtaaatatggttaaaaggtgtgttatttgaacgatcatttacatgacaacttacg |
402 |
Q |
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| T |
32158635 |
aagattgtaccttcttcttgaacaacattgtgggagtaaatatggttaaaaggtgtgttatttgaacgatcatttgcatgacaacttacg |
32158724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 485 - 570
Target Start/End: Original strand, 32158807 - 32158892
Alignment:
| Q |
485 |
ttatcacaaattaaatgtacaaatattatttctctatttttaacttaaacaagggaattatttatttgtttgacttatgagtacag |
570 |
Q |
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| T |
32158807 |
ttatcacagattaaatgtacaaatattatttctctacttttaacttaaacaagggaattatttatttgtttgacttatgagtacag |
32158892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 527
Target Start/End: Complemental strand, 6884943 - 6884901
Alignment:
| Q |
485 |
ttatcacaaattaaatgtacaaatattatttctctatttttaa |
527 |
Q |
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| T |
6884943 |
ttatcacaaattagttgtacaaatatcatttctctatttttaa |
6884901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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