View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10792_3 (Length: 500)
Name: NF10792_3
Description: NF10792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10792_3 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 35 - 319
Target Start/End: Original strand, 30440440 - 30440710
Alignment:
| Q |
35 |
tgctttaaatatttcatcctttcctctgtgctcataggcaatattctttctgcaattaaagaatagagttacaagttaattagagtgaatatactttaac |
134 |
Q |
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| T |
30440440 |
tgctttaaatatttcatcctttcctctgtgctcataggcgatattctttctgcaattaaagaatagagtgacaagttaatcacaatgaatatattttaac |
30440539 |
T |
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| Q |
135 |
ttgaatgcattaaagaacttacgaatataatcttctagatcttctggataaatttctctatctaggagatctttaatagtgaattctgccatttgatcta |
234 |
Q |
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| T |
30440540 |
ttgaatgcattaaagaacttacgaatataattttcta---------gataaatttctctatctaggagatctttaatag-----tctgccatttgatcta |
30440625 |
T |
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| Q |
235 |
acgaagcgacaacagctttttcatacttcaaaagcagagcgaagacatatcctatcatagatgcgagctcatcgttccaataaaa |
319 |
Q |
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| T |
30440626 |
acaaagcgacagcagctttttcatacttcaaaagcagagcgaagtcatatcctatcatggatgcgagctcatcgttccaataaaa |
30440710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 369 - 489
Target Start/End: Original strand, 30440712 - 30440832
Alignment:
| Q |
369 |
ggacaacctcatacgcgaaataaactctttttccaaaatttatagttagagcgaaagagaggaaaaaacctttgtctgggtgcgctataatagacaccca |
468 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
30440712 |
ggacaacctcatacgcgaaataaactctttttccaagatttatagttagagcgaaagagaggaaaaaacctttgtctgggtgcgctgtgatagacaccca |
30440811 |
T |
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| Q |
469 |
ggtccctttatctaccccttt |
489 |
Q |
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| T |
30440812 |
ggtccctttatctaccccttt |
30440832 |
T |
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