View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10792_4 (Length: 474)
Name: NF10792_4
Description: NF10792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10792_4 |
 | |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Complemental strand, 39695647 - 39695174
Alignment:
| Q |
1 |
accttgccatgatttatttcatcaggtaaccaatcagtactcctacgaacctggtcaattaaagcagtgctcaaataaaaagcaatccctataagcattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
39695647 |
accttgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaaataaaaagcaattcctataagcattg |
39695548 |
T |
|
| Q |
101 |
aaatcattgctgttgatgtgttcttaagtgattgtggaaattgttggtagtagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39695547 |
aaatcattgctgttgatgtgttcttaagtgattgtggaaattgttggtagtagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaa |
39695448 |
T |
|
| Q |
201 |
cactaactgtggaaacaaccataacacagacatggaaacattatgcacatgtactaatttgagcctctttgattcaacaagagcagaagcaaccatccca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| |
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| T |
39695447 |
cactaactgtggaaacaaccataacacagacatggaaacattatgcacatgtactaatttgagtctctttgattcaacaagagcagagacaaccatgcca |
39695348 |
T |
|
| Q |
301 |
agaatattcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatg |
400 |
Q |
| |
|
|||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39695347 |
agaacagtcaacacatgtcctgctcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatg |
39695248 |
T |
|
| Q |
401 |
tgaggaaaatgggtgctgatattaagacaataacagaaacagaactagctgggattttaaaatggggtcctaat |
474 |
Q |
| |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39695247 |
tgaggaaaatgggtgctgatatcaagactataacagaaacagaactagctgggattttaaaatggggtcctaat |
39695174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 39934466 - 39934940
Alignment:
| Q |
1 |
accttgccatgatttatttcatcaggtaaccaatcagtactcctacgaacctggtcaattaaagcagtgctcaaataaaaagcaatccctataagcattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
39934466 |
accttgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaagtaaaaagcaattcctataagcattg |
39934565 |
T |
|
| Q |
101 |
aaatcattgctgttgatgtgttcttaagtgattgtggaaattgttggtagtagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaa |
200 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39934566 |
aaatcattgcagttgatgtgctcttaagtgattgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaa |
39934665 |
T |
|
| Q |
201 |
cactaactgtggaaacaaccataacacagacatggaaacat--tatgcacatgtactaatttgagcctctttgattcaacaagagcagaagcaaccatcc |
298 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||| ||||||| | |
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| T |
39934666 |
cactaattgtggaaaaaaccataacacggacatggaaacattatatgcacatgtgctaatttgagtctctttgattcaacaagagcagagacaaccatgc |
39934765 |
T |
|
| Q |
299 |
caagaatattcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaa |
398 |
Q |
| |
|
|||||| | |||||||||||||| |||||||||| |||||||||||| | ||| | ||||| ||||||||||| ||| || ||||| ||||||||||| |
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|
| T |
39934766 |
caagaacagtcaacacatgtcctgctcctattcgctggagcggcataagtgatttgccggtaatcttatgccaacatggcaagagcaccctgtcaagaaa |
39934865 |
T |
|
| Q |
399 |
tgtgaggaaaatgggtgctgatattaagacaataacagaaacagaactagctgggattttaaaatggggtcctaa |
473 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39934866 |
agtgagaaaaatgggtgctgatattaagacaataacagaaacaaaactagctgggattttaaaatggggtcctaa |
39934940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Complemental strand, 39704556 - 39704086
Alignment:
| Q |
1 |
accttgccatgatttatttcatcaggtaaccaatcagtactcctacgaacctggtcaattaaagcagtgctcaaataaaaagcaatccctataagcattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
39704556 |
accttgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaaataaaaagcaatacctataagcattg |
39704457 |
T |
|
| Q |
101 |
aaatcattgctgttgatgtgttcttaagtgattgtggaaattgttggtagtagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaa |
200 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39704456 |
aaatcattgcagttgatgtgatcttaagtgattgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaa |
39704357 |
T |
|
| Q |
201 |
cactaactgtggaaacaaccataacacagacatggaaacattatgcacatgtactaatttgagcctctttgattcaacaagagcagaagcaaccatccca |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| |
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|
| T |
39704356 |
cactaattgtggaaacaaccataacacagacatttccac---atgcacatgtaccaatttgagcctctttgattcaacaagagcagagacaaccatgcca |
39704260 |
T |
|
| Q |
301 |
agaatattcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatg |
400 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||| || ||||||||| |||| | |||| ||||||||||| ||| |||||||||||||||||||| | |
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|
| T |
39704259 |
agaacagtcaacacatgtcctactcctattcgttgaagtggcataggcgtttttccagtaatcttatgccaacatggcaatagcactctgtcaagaaagg |
39704160 |
T |
|
| Q |
401 |
tgaggaaaatgggtgctgatattaagacaataacagaaacagaactagctgggattttaaaatggggtcctaat |
474 |
Q |
| |
|
|||||||||||| || |||||||| ||| |||||||||||||||| |||||| ||||| ||||||||||||||| |
|
|
| T |
39704159 |
tgaggaaaatggatgttgatattatgactataacagaaacagaaccagctggaattttgaaatggggtcctaat |
39704086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 7 - 465
Target Start/End: Original strand, 39928825 - 39929280
Alignment:
| Q |
7 |
ccatgatttatttcatcaggtaaccaatcagtactcctacgaacctggtcaattaaagcagtgctcaaataaaaagcaatccctataagcattgaaatca |
106 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| || |||||||| ||| |||||| |||||||||| ||||||||||||||||| | |
|
|
| T |
39928825 |
ccatgatttatgtcatcaggtaaccaatcagtactcctacgaacttgatcaattaatgcattgctcatgtaaaaagcaacccctataagcattgaaaccg |
39928924 |
T |
|
| Q |
107 |
ttgctgttgatgtgttcttaagtgattgtggaaattgttggtagtagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaa |
206 |
Q |
| |
|
|||| ||||||||| |||| || ||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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|
| T |
39928925 |
ttgcagttgatgtgctctttagcgattgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaacgcttctccgataccaaccaacactaa |
39929024 |
T |
|
| Q |
207 |
ctgtggaaacaaccataacacagacatggaaacattatgcacatgtactaatttgagcctctttgattcaacaagagcagaagcaaccatcccaagaata |
306 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| ||| |||| |||||||||| ||||| ||||||||||||||||| | ||||| ||||||| | |
|
|
| T |
39929025 |
ttgtggaaacaaccataatacagacattgaaac---atgttcatgcgctaatttgagtctcttcgattcaacaagagcagagaccaccatgccaagaaca |
39929121 |
T |
|
| Q |
307 |
ttcaacacatgtcctactcctattcgttggagcggcataggcattttcctggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgagga |
406 |
Q |
| |
|
|| ||||||||||||||||||||| | |||||| || |||| ||| ||||||||||||||||||| ||| |||||||| ||||||||||| ||||||| |
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|
| T |
39929122 |
ttgaacacatgtcctactcctatttgatggagcagcttaggagattttctggtaaccttatgccaacttggcaatagcaccctgtcaagaaaagtgagga |
39929221 |
T |
|
| Q |
407 |
aaatgggtgctgatattaagacaataacagaaacagaactagctgggattttaaaatgg |
465 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
39929222 |
aaatgggtgctgatattaagactataacagaaatagaaccagctgggatttcaaaatgg |
39929280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 112 - 464
Target Start/End: Original strand, 38061607 - 38061960
Alignment:
| Q |
112 |
gttgatgtgttcttaagtgattgtggaaattgttggtagtagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaactgtg |
211 |
Q |
| |
|
||||||||| |||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||| || ||| |||| |
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|
| T |
38061607 |
gttgatgtgctcttcagtgactgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaatactcaccagcattaattgtg |
38061706 |
T |
|
| Q |
212 |
gaaacaaccataacacagacatggaaacattatgcacatgtactaatttgagcctctttgattcaacaagagcagaagcaaccatcccaagaatattcaa |
311 |
Q |
| |
|
||||||| |||||||||||||| || ||| |||||| |||||||||| || |||| ||||||||||| || ||||||| || ||||| |||| |
|
|
| T |
38061707 |
gaaacaaacataacacagacatttccac---atgaacatgtgctaatttgagtctttttgtctcaacaagagcggagacaaccatacccagaatggtcaa |
38061803 |
T |
|
| Q |
312 |
cacatgtcctactcctattcgttggagcggcataggcattttcct-ggtaaccttatgccaacctggtaatagcactctgtcaagaaatgtgaggaaaat |
410 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||| | ||| | | ||| ||||||||| |||| ||||||||||||||| ||||||||||| |
|
|
| T |
38061804 |
cacatagcctactcctattcgttggagcggcataggcttttttttcggttatcgtattccaacctggcaataacactctgtcaagaaaggtgaggaaaat |
38061903 |
T |
|
| Q |
411 |
gggtgctgatattaagac---aataacagaaacagaactagctgggattttaaaatg |
464 |
Q |
| |
|
| || ||||||||| || ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38061904 |
agatgttgatattaacactataataacagaaacagaaccagctgggattttaaaatg |
38061960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 38059050 - 38059126
Alignment:
| Q |
7 |
ccatgatttatttcatcaggtaaccaatcagtactcctacgaacctggtcaattaaagcagtgctcaaataaaaagc |
83 |
Q |
| |
|
||||||||||| ||||| |||||||||| |||| ||||| | | ||||||| ||||| ||||||||| | |||||| |
|
|
| T |
38059050 |
ccatgatttatgtcatctggtaaccaattagtaatcctatggatttggtcaactaaagtagtgctcaagttaaaagc |
38059126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 168
Target Start/End: Complemental strand, 4847209 - 4847134
Alignment:
| Q |
93 |
aagcattgaaatcattgctgttgatgtgttcttaagtgattgtggaaattgttggtagtagaatgtaacttgtcca |
168 |
Q |
| |
|
||||||||||||||||| ||||||||| || || | ||||||||||||||| |||||| |||||||||| |||| |
|
|
| T |
4847209 |
aagcattgaaatcattggagttgatgtgctcaaaaattattgtggaaattgtttgtagtaaaatgtaacttctcca |
4847134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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