View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10792_7 (Length: 433)
Name: NF10792_7
Description: NF10792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10792_7 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 43 - 403
Target Start/End: Original strand, 55074844 - 55075204
Alignment:
| Q |
43 |
agggtggacacacacatgtttttgttggatattggatacttactaattgaatcaaccttcaatgacattattaattgcatggttaaactgacatctatat |
142 |
Q |
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| T |
55074844 |
agggtggacacacacatgtttttgttggatattggatacttactaattgaatcaaccttcaatgacattattaattgcatggttaaactgacatctatat |
55074943 |
T |
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| Q |
143 |
caaaatattttctgcatatttaaattcaatttcacatgtaatgtaaggattatacattaatagtagttttcatttgtgcaggtatagttgtgttgacgta |
242 |
Q |
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| T |
55074944 |
caaaatattttctgcatatttaaattcaatttcacatgtaatgtaaggattatacattaacagtagttttcatttgtgcaggtatagttgtgttgacgta |
55075043 |
T |
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| Q |
243 |
atatttctctatttctatatggggaactagttaagtggatgtcaccttccttgcatagactcttcatgttctgcgaatgagattgcttggtggaagagat |
342 |
Q |
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| T |
55075044 |
atatttctctatttctatatggggaactagttaagtggatgtcaccttccttgcatagactcttcatgttctgcgaatgagattgcttggtggaagagat |
55075143 |
T |
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| Q |
343 |
ggaaaaggccaccaaatttttctgtttttcaacccaagggataatctttaaagttgattgt |
403 |
Q |
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| T |
55075144 |
ggaaaaggccaacaaatttttctgtttttcaacccaagggataatctttaaagttgattgt |
55075204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 251 - 326
Target Start/End: Complemental strand, 50371493 - 50371418
Alignment:
| Q |
251 |
ctatttctatatggggaactagttaagtggatgtcaccttccttgcatagactcttcatgttctgcgaatgagatt |
326 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
50371493 |
ctatttctatgtgaggaactagttaagtggatgtcaccttccttgcatagactcttcatgatctacgaatgagatt |
50371418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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