View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10793_1 (Length: 446)
Name: NF10793_1
Description: NF10793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10793_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 39713146 - 39712718
Alignment:
| Q |
18 |
ctgtgaagcaaatgataatggtcctcttcctaatcctaacaaaccagcagcaccatgaaatagtcctctattccaatgaccacaaccaaacataacattt |
117 |
Q |
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| T |
39713146 |
ctgtgaagcaaatgataatggtcctcttcctaatcctaacaaaccagcagcaccgtgaaatagtcctctattccaatgaccacaaccaaacataacattt |
39713047 |
T |
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| Q |
118 |
tccacatgtttttgttctgattttccattaggagtagtgagatgaacagtaaaagtttccaaagcaaaatcaccagttgtattggaactatcaccatacc |
217 |
Q |
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| T |
39713046 |
tccacatgtttttgttctgattttccattaggagtagtgagattaacagtaaaagtttccaaagcaaaatcaccagttgtattggaactatcaccatacc |
39712947 |
T |
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| Q |
218 |
aatagaagtaaggacaagtttgattctcatctttacaaggcttaggtggatctggtgatgaaactaatttacacctaggatcatgacatgttatattttc |
317 |
Q |
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| T |
39712946 |
aatagaagtaaggacaagtttgattctcatctttacaaggcttaggtggatctggtgatgaaactaatttacacctaggatcatgacatgttatattttc |
39712847 |
T |
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| Q |
318 |
aaaagaactagattctttaggatcataatatggaccactttgttcaaaacaagcaatgcaaggaacacattgaatccaattaagatcactaccagtatca |
417 |
Q |
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| T |
39712846 |
aaaagaactagattctttaggatcataatatggaccactttgttcaaaacaagcaatgcaaggaacacattgaatccaattaagatcactaccagtatca |
39712747 |
T |
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| Q |
418 |
agtatcaaagaataatgcttaggtggtgt |
446 |
Q |
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| T |
39712746 |
agtatcaaagaataatgcttaggtggtgt |
39712718 |
T |
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Back To:
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Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 443
Target Start/End: Original strand, 15283979 - 15284407
Alignment:
| Q |
18 |
ctgtgaagcaaatgataatggtcctcttcctaatcctaacaaaccagcagcaccatgaaatagtcctctattccaatgaccacaaccaaacataacattt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||| || ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15283979 |
ctgtgaagcaaatgataatggtcctcttcctaatcctaacaatccagaagcgccgcgaaatagtcctttattccaatgaccacaaccaaacataacattt |
15284078 |
T |
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| Q |
118 |
tccacatgtttttgttctgattttccattaggagtagtgagatgaacagtaaaagtttccaaagcaaaatcaccagttgtattggaactatcaccatacc |
217 |
Q |
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| T |
15284079 |
tcgacgattttgaacacggatttcccgtttggttttgtaagattcactctaaatgtttcaagtgcgaaatcgccagttgtgttagaactatcgccatacc |
15284178 |
T |
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| Q |
218 |
aatagaagtaaggacaagtttgatt---ctcatctttacaaggcttaggtggatctggtgatgaaactaatttacacctaggatcatgacatgttatatt |
314 |
Q |
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| T |
15284179 |
aataaaaatacggacaagtttgattctcctcagccttacagggctgaggaggatcaggcgatgacacgagttgacaccgcgaatcgtgacaacttatgtt |
15284278 |
T |
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| Q |
315 |
ttcaaaagaactagattctttaggatcataatatggaccactttgttcaaaacaagcaatgcaaggaacacattgaatccaattaagatcactaccagta |
414 |
Q |
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| T |
15284279 |
cttaaaagaagtggaatctttaggatcataatatggtccattttgatcaaaacaagcataacaaggaacacattgaatccagttaagatcactaccggtg |
15284378 |
T |
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| Q |
415 |
tcaagtatcaaagaataatgcttaggtgg |
443 |
Q |
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| T |
15284379 |
tcaagtatcagagaaaaatgttttggtgg |
15284407 |
T |
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