View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10793_4 (Length: 306)
Name: NF10793_4
Description: NF10793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10793_4 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 141 - 274
Target Start/End: Original strand, 37465900 - 37466033
Alignment:
| Q |
141 |
gtatatactttgcaactgtaatctgactatacactgctaaacttccatgggattaagcgggtatccagaacagtataacaaagtgaacatgcatccagaa |
240 |
Q |
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| T |
37465900 |
gtatatactttgcaactgtaatctgactatacactgctaaacttccatgagattaagcgggtatccagaacagtataacaaagtgaacatgcatccagaa |
37465999 |
T |
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| Q |
241 |
gattgaaaacacaaagacggaatgaatcgctaga |
274 |
Q |
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| T |
37466000 |
gattgaaaacacaaagacggaatgaatcgctaga |
37466033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 37465760 - 37465865
Alignment:
| Q |
1 |
taaacttctagctcaacgtgaacttttctttggaagtgttgtacaaaaaccaacctcattgtgctttcatacggatgtcaaacaagaatatgcaaatcag |
100 |
Q |
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| T |
37465760 |
taaacttctagctcaacgtgaacttttctttggaagtgttgtacaaaaaccaacctcattgtgctttcatacggatgtcaaacaagaatatgcaaatcag |
37465859 |
T |
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| Q |
101 |
gggcca |
106 |
Q |
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| T |
37465860 |
gggcca |
37465865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 47262571 - 47262636
Alignment:
| Q |
226 |
aacatgcatccagaagattgaaaacacaaagacggaatgaatcgctagagaattttagcaaagaga |
291 |
Q |
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| T |
47262571 |
aacatgcatgtagaagattgaaagcacaaagagggaatgaatcattggagaatctaagcaaagaga |
47262636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 8576392 - 8576333
Alignment:
| Q |
42 |
tacaaaaaccaacctcattgtgctttcatacggatgtcaaacaagaatatgcaaatcagg |
101 |
Q |
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| T |
8576392 |
tacaataaccaacctcattgtgctttcataagcatgtccaacaagaatatgcaaatcagg |
8576333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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