View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10793_low_1 (Length: 430)
Name: NF10793_low_1
Description: NF10793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10793_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 414
Target Start/End: Complemental strand, 13477751 - 13477356
Alignment:
| Q |
19 |
agtttggtccataaaataaaatgataaaaatagcatttattaacaaactctgtcatgcaaccagtgttactagtttgtttgtttctttagttattattat |
118 |
Q |
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| T |
13477751 |
agtttgctccataaaataaaatgataaaaatagcatttattaacaaactctgtcatgcaaccagtgttactagtttgtttgtttctttagttattattat |
13477652 |
T |
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| Q |
119 |
tacagacagtattaattgataaaaagggaggcaaaacataaagaagtgaagaatgtaaattataaagtaaaggatttaataattgagataagatggtaca |
218 |
Q |
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| T |
13477651 |
tacagacagtattaattgataaaaagggaggcaaaacataaagaagtgaagaatgtaaattataaagtaaaggatttaataattgagataagatggtaca |
13477552 |
T |
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| Q |
219 |
tgacctacaaggtgatattaattatttgatataagctagaattggaaccagctataggaaggaatgagtatagtagtgtgagggatggtagaatagaagt |
318 |
Q |
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| T |
13477551 |
tgacctacaaggtgatattaattaattgatataagctagaattggaaccagctataggaaggaatgagtatagtagtgtgagggatggtagaatagaagt |
13477452 |
T |
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| Q |
319 |
agaggtgagtgacaataaaggggaatacaacacaaaaacagcagtacaacagaactgggtgctctgttacactgccaacacaatgtctaatttctt |
414 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13477451 |
agaggtgagtgacaataaaggggaacacaacacaaaaacagcagtacaacagaactgggtgctctgttacactgccaacacaatgtctaatttctt |
13477356 |
T |
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