View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10794_1 (Length: 743)
Name: NF10794_1
Description: NF10794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10794_1 |
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Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 184 - 713
Target Start/End: Original strand, 27301729 - 27302257
Alignment:
| Q |
184 |
taaacaatcgataacttttatatnnnnnnnnttatttttgatgttttaatgtgttgaacatacaaaatttatttttaaatttcttatcaaattttataaa |
283 |
Q |
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| T |
27301729 |
taaacaatcgataatttttatatagaaaaaattatttttgatgttttaatgtgttgaacatacaaa-tttatttttaaatttcttatcaagttttataaa |
27301827 |
T |
|
| Q |
284 |
gacgtttgttagtatttttataaagtaatgctatcacatatactaatacatattcattgtgggcttttcaaattgtgcctaaaaccacttcaatattttt |
383 |
Q |
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| T |
27301828 |
gacgtttgttagtatttttataaagtaatgttatcacatatactaatacatattcattgtgggcttttcaaattgtgcctaaaaccacttcaatattttt |
27301927 |
T |
|
| Q |
384 |
ggaaattgctctatgccctcttagttttgctcaaaaatcctttgatttattggagcgtgattttttatagtgtaaaatctatcagaagataaggttcaat |
483 |
Q |
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| T |
27301928 |
ggaaattgctctatgccttcttagttttgctcaaaaatcctttgacttattggagcgtaattttttatagtgtaaaatctatcagaagataaggttcaat |
27302027 |
T |
|
| Q |
484 |
cgacattttgttcatcgaatgttatctttcgataagcttattttaaaggttgatcaacaaatatcgaacaaaagacaaatttgttgaactaacttaagac |
583 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||| |
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| T |
27302028 |
cgacattttgttcattgaatgttatctttcgataagcttattttaaaggttgatcaacaaatatccatcaaaagacaaatttgttgaactaacctaagac |
27302127 |
T |
|
| Q |
584 |
ccaaatacctacatctccatttcttggcaaattactcaaaccaccctagaatccacatgaacctcaacctatgaaaaccataacttctagacaatcacaa |
683 |
Q |
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| T |
27302128 |
ccaaatacctacatctccatttctaggcaaattactcaaaccacccgagaatccacatgaacctcaacctatgaaaaccataacttctagacaatcacaa |
27302227 |
T |
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| Q |
684 |
actttctagaacatctcataactcaaatac |
713 |
Q |
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| T |
27302228 |
actttccggaacatctcataactcaaatac |
27302257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 27300824 - 27300996
Alignment:
| Q |
14 |
gaacctgtggacatgttaaatccattagccaataatgagtcagactcaatatggatcaactgaaaccgcaggatagacctgttaagacttaagatagact |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27300824 |
gaacttgtggacatgttaaatccattagccaataatgagtcagactcaatatggatcaactgaaaccgcaggatagacctgttaagacttaagatagact |
27300923 |
T |
|
| Q |
114 |
aaaactcatcatgaagcactagatgcctagcttaaagaataaaaatgcatcaataaagtaagtgtgttgataa |
186 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
27300924 |
aaaactcatcatgaagcactagatgcctagcttaaaaaataaaaatgcatcaataaagtaagtgtcttgataa |
27300996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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