View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10794_11 (Length: 360)
Name: NF10794_11
Description: NF10794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10794_11 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 15 - 360
Target Start/End: Complemental strand, 11224905 - 11224564
Alignment:
| Q |
15 |
tatacttaaagctatagcttttccttcttcgttcacataatttccatcattctttattaaagttgacaaaataacctcgcttcgacatacaggccttcct |
114 |
Q |
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| T |
11224905 |
tatacttacaactattgcttttccttcttcgttcacataatttccatcattctttattaaagttgacaaaataacctcgcttcgacatacaggccttcct |
11224806 |
T |
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| Q |
115 |
aattgttgttcctaacatcataaataaaatgtaaattaagaactcatcaataacagctttgttgggatacataaatattttgaatctgcttaccattaga |
214 |
Q |
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| T |
11224805 |
aattgttgttcctaacatcataaataaaatgtaaattaagaactcatcaataacagctttgttgggatacataaatattttgaatctgcttaccattaga |
11224706 |
T |
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| Q |
215 |
cgaccccttcttgcgttgctcctactaccaccaacatgtgggactttaagcttcttacgattttcggtattcttctcactttgttgctacaattttaaac |
314 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
11224705 |
cgaccccttcttgcgttgctcctactaccaccagcatgtgggactttaagcttcttacgattttcggtattcttctcactttgtttcaacaattttaaac |
11224606 |
T |
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| Q |
315 |
tatgatagttaatacttgtatgacaaagttttttagaatatgagat |
360 |
Q |
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| T |
11224605 |
tatgatagtta----ttgtatgacatagttttttagaatatgagat |
11224564 |
T |
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