View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10794_12 (Length: 349)
Name: NF10794_12
Description: NF10794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10794_12 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 47 - 349
Target Start/End: Original strand, 31706382 - 31706684
Alignment:
| Q |
47 |
tatgatattgcaaggaaaaattaagttatatattgttatagcttactcnnnnnnnnnnnngtaatggttcctgcaacatgtctgcttttcattttcagca |
146 |
Q |
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| T |
31706382 |
tatgatattgcaaggaaaaattaagttatatattgttatagcttactctttttcttttttgtaatggttcctgcaacatgtctgcttttcattttcagca |
31706481 |
T |
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| Q |
147 |
tcacctgaaatgaatgaaagcatttgatgaatggactaaccaactatatttcaatttctactaaaatatgaaagaacaaaaaattacctggccggttcga |
246 |
Q |
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| T |
31706482 |
tcacctgaaatgaatgcaagcatttgatgaatggactaaccaactatatttcaatttctactaaaatatgaaagaacaaaaaattacctggccggttcga |
31706581 |
T |
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| Q |
247 |
tgtatataaacagaaactattttcgagtgaagatcacctacaaatatcaatcaccaaatatagtttaatcattttgcaattttgcaaatgaaaacaagta |
346 |
Q |
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| T |
31706582 |
tgtatataaacagaaactattttccagtgaagatcacctacatacatcaatcaccaaatatagtttaatcattttgcaattttgcaaatgaaaacaagta |
31706681 |
T |
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| Q |
347 |
tta |
349 |
Q |
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||| |
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| T |
31706682 |
tta |
31706684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 31706334 - 31706363
Alignment:
| Q |
15 |
aatatctggtaaaaatatcatgtttataat |
44 |
Q |
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| T |
31706334 |
aatatctggtaaaaatatcatgtttataat |
31706363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 38269485 - 38269424
Alignment:
| Q |
224 |
aaaaaattacctggccggttcgatgtatataaacagaaactattttcgagtgaagatcacct |
285 |
Q |
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| T |
38269485 |
aaaaatttacatgtcccgttcgatgtatgtaaacagaaactattttccagtgtagatcacct |
38269424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 38269593 - 38269548
Alignment:
| Q |
113 |
gttcctgcaacatgtctgcttttcattttcagcatcacctgaaatg |
158 |
Q |
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| T |
38269593 |
gttcctgcaacatgtttgctcttcattttcagcattacctgaaatg |
38269548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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