View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10794_15 (Length: 324)
Name: NF10794_15
Description: NF10794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10794_15 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 38 - 254
Target Start/End: Original strand, 8188764 - 8188980
Alignment:
| Q |
38 |
atttgcatttacaggagagaggggtgcaaaatctggagaagatatatttaaagatactggtgggggagtagtaggcattggcagacttgatggagttctt |
137 |
Q |
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| T |
8188764 |
atttgcatttacaggagagaggggtgcaaaatctggagaagatatatttaaagatactggtgggggagtagtaggcattggcagacttgatggagttctt |
8188863 |
T |
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| Q |
138 |
ccagctgcagcattcttcgccatctgccaaaatgttaaaatcaattgtcaattgtcaaatactcaactgtactcacaatcatgaacatagaaaaacataa |
237 |
Q |
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| T |
8188864 |
ccagctgcagcattcttcgccatctgccaaaatgttaaaatcaattgtcaattgtcaaatgctcaactgtactcacaatcatgaacatagaaaaacataa |
8188963 |
T |
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| Q |
238 |
tgcaggttctgttttaa |
254 |
Q |
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||||||||||||||||| |
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| T |
8188964 |
tgcaggttctgttttaa |
8188980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 8189010 - 8189076
Alignment:
| Q |
258 |
agtgcgaaatgcctcactaacattttgtagctgattaaatatgtcaacctatggtaaaccaggaacc |
324 |
Q |
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| T |
8189010 |
agtgcgaaatgcctcactaacattttgtagctgattaaatatgtcaacctatggtaaaccaggaacc |
8189076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 37 - 246
Target Start/End: Original strand, 42346957 - 42347165
Alignment:
| Q |
37 |
aatttgcatttacaggagagaggggtgcaaaatctggagaagatatatttaaagatactggtgggggagtagtaggcattggcagacttgatggagttct |
136 |
Q |
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| T |
42346957 |
aatttgcatttacaggagagaggggtgcaaaatctggggaagatatatttaaagatgctggtggaggagtcg---gcattggcatgcttgacggagttct |
42347053 |
T |
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| Q |
137 |
tccagctgcagcattcttcgccatctgccaaaatgttaaaatcaattgtcaattgtcaaatactcaactgtac---tcacaatcatgaacatagaaaaac |
233 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||| | |
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| T |
42347054 |
tccagctgcagcattcttcgccatctgccgaaatgttaaaatcaattgccaattgtcaaatactcaactgtactcgtcacaatcataaacatagaaata- |
42347152 |
T |
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| Q |
234 |
ataatgcaggttc |
246 |
Q |
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||||||||||||| |
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| T |
42347153 |
ataatgcaggttc |
42347165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 42347218 - 42347284
Alignment:
| Q |
258 |
agtgcgaaatgcctcactaacattttgtagctgattaaatatgtcaacctatggtaaaccaggaacc |
324 |
Q |
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|||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||| ||||| |
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| T |
42347218 |
agtgcgaaatgcctcactggcattttgaagctgatcaaatatgtcaacctatggtaaaccaagaacc |
42347284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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