View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10794_3 (Length: 559)
Name: NF10794_3
Description: NF10794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10794_3 |
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Alignment Details
Target: chr3 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 15 - 540
Target Start/End: Original strand, 50764440 - 50764965
Alignment:
| Q |
15 |
tattattaaagaggttaagattcagtcatgaagctgatcaggtggatgaagacatgattgagactgttattctatgtttgtggaggatgaatgtttttaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50764440 |
tattattaaagaggttaagattcagtcatgaagctgatcaggtggatgaagacatgattgagactgttattctatgtttgtggaggatgaatgtttttaa |
50764539 |
T |
|
| Q |
115 |
tcagttgtaattcggggctttttgcaaaagtttaggttcatagtcaaatgttagacaaattcagaatgagatccatgctaaaagttttcttcaaattaga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50764540 |
tcagttgtaattcggggctttttgcaaaagtttaggttcatagtcaaatgttagacaaattcagaatgagatccatgctaaaagttttcttcaaattaga |
50764639 |
T |
|
| Q |
215 |
tgttggtgaagcaatttgagaggcttatcaagttgttttctatcactttgattcatttagggttttctttggtcattcttagcttattgtcaaatgtttc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50764640 |
tgttggtgaagcaatttgagaggcttatcaagttgttttctatcactttgattcatttagggttttctttggtcattcttagcttattgtcaaatgtttc |
50764739 |
T |
|
| Q |
315 |
ttggcttatttccatagttgcaactggttgctgcttctgttatgtcatcgtgcagctttattctctgtggttgttttgtgttcagtaaattattcaccaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50764740 |
ttggcttatttccatagttgcaactggttgctgcttctgttatgtcatcgtgcagctttattctctgtggttgttttgtgttcagtaaattattcaccaa |
50764839 |
T |
|
| Q |
415 |
tgtgcagattttccttctattcgttcatgcaatcatgcttaaaaaacaaagacctactggctactacacgtgtgcatgcgcacgatagactcaaattagc |
514 |
Q |
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| T |
50764840 |
tgtgcagattttccttctattcgttcatgcaatcatgcttaaaaaacaaagacctactggctactacacgtgtgcatgcgcacgatagactcaaattagc |
50764939 |
T |
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| Q |
515 |
tctgaaatccacacgttctgttgtga |
540 |
Q |
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| T |
50764940 |
tctgaaatccacacgttctgttgtga |
50764965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 35100925 - 35100847
Alignment:
| Q |
49 |
tgatcaggtggatgaagacatgattgagactgttattctatgtttgtggaggatgaatgtttttaatcagttgtaattc |
127 |
Q |
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|||||||||| ||||||||||||| | |||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35100925 |
tgatcaggtgaatgaagacatgataggcactggtattctatatttgtggaggatgaatgtttttaatcagttgtaattc |
35100847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 25 - 237
Target Start/End: Original strand, 35153354 - 35153576
Alignment:
| Q |
25 |
gaggttaagattcagtcatgaagctgatcaggtggatgaagacatgattgagactgttattctatgtttgtggaggatgaatgtttttaatcagttgtaa |
124 |
Q |
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| T |
35153354 |
gaggttacggttctgtcatgaacctggtccggtgaatgaagacatgataagtattgt-attctatgtttgtggaggatgaatgttttgaattagttgcaa |
35153452 |
T |
|
| Q |
125 |
ttcggggctttttgcaa------aagtttaggttcat---agtcaaatgttagacaaattcagaatgagatccatgctaaaagttttcttcaaattagat |
215 |
Q |
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| T |
35153453 |
ttcgggacttctctcaacttcataagtcttggttcatcatagtctcatgttggacaaattcagaatgaga-ccatgcttaaagttttcttcaaataagat |
35153551 |
T |
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| Q |
216 |
g---ttggtgaagcaatttgagagg |
237 |
Q |
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| ||||||||||||||||||||| |
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| T |
35153552 |
gttattggtgaagcaatttgagagg |
35153576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 35040631 - 35040556
Alignment:
| Q |
52 |
tcaggtggatgaagacatgattgagactgttattctatgtttgtggaggatgaatgtttttaatcagttgtaattc |
127 |
Q |
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||||||| ||||||||||||| | ||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
35040631 |
tcaggtgaatgaagacatgatagtcactgttattctatgtttgtagaggatgaatgtatttaatcagttgtaattc |
35040556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 30696143 - 30696215
Alignment:
| Q |
15 |
tattattaaagaggttaagattcagtcatgaagctgatcaggtggatgaagacatgattgagactgttattct |
87 |
Q |
| |
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||||||||| ||||||||||||| |||||||| ||||||||||| ||||||||||||||| ||||||||||| |
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| T |
30696143 |
tattattaatgaggttaagattcggtcatgaacctgatcaggtgaatgaagacatgattggtactgttattct |
30696215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 35092237 - 35092156
Alignment:
| Q |
25 |
gaggttaagattcagtcatgaagctgatcaggtggatgaagacatgattgagactgttattctatgtttgtggaggatgaat |
106 |
Q |
| |
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||||||| | ||| |||||||| ||||||||||| ||||||| || | | ||||||||| |||||||||||||| ||||| |
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| T |
35092237 |
gaggttatggttctgtcatgaacctgatcaggtgaatgaagatatcctagttactgttattgtatgtttgtggagggtgaat |
35092156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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