View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10794_6 (Length: 443)
Name: NF10794_6
Description: NF10794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10794_6 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 12 - 414
Target Start/End: Original strand, 25802510 - 25802913
Alignment:
| Q |
12 |
aaaggtgataaagaacatattggagaggaatagacagggacaaaaaagtaagattttaatctacaatgttccatttcattctacacgctctaaatcgagg |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802510 |
aaaggtgataaagaacatattggagaggaatagacagggacaaaaaagtaagattttaatctacaatgttccatttcattctacacgctctaaatcgagg |
25802609 |
T |
|
| Q |
112 |
gaataaaacatgattcaatcaataccaaaaatttgaaaccaaataaatggt-cgagtgagatgaaaattgcaaatttattcattcaatataaattttttg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25802610 |
gaataaaacatgattcaatcaataccaaaaatttgaaaccaaataaataatacaagtgagatgaaaattgcaattttattcattcaatataaattttttg |
25802709 |
T |
|
| Q |
211 |
attcatagatgacctccagctatcactacaatatcagcatacaactccatctcatgattcagtgtagcaatggaagaaatattaacaatcttttcattag |
310 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802710 |
attcatagatgacctccagctatcactacaatatcagtatacaactccatctcatgattcagtgtagcaatggaagaaatattaacaatcttttcattag |
25802809 |
T |
|
| Q |
311 |
ctaagctacgttcgcacatgtcgactgcatcaccagcatatttgacagccaaccctatcaattccggatcctcagccaatgcaccttttacctcaacaac |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25802810 |
ctaagctacgttcgcacatgtcgactgcatcaccagcatatttgacagccaaccctatcaattccggatcctcagccaatgctccttttacctcaacaac |
25802909 |
T |
|
| Q |
411 |
cacg |
414 |
Q |
| |
|
|||| |
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|
| T |
25802910 |
cacg |
25802913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 185 - 355
Target Start/End: Original strand, 23922262 - 23922432
Alignment:
| Q |
185 |
tttattcattcaatataaattttttgattcatagatgacctccagctatcactacaatatcagcatacaactccatctcatgattcagtgtagcaatgga |
284 |
Q |
| |
|
||||||||| ||||||||||| || ||| ||||||| ||||| ||||||| |||||||||| ||| |||| |||||||||||||| ||||||||||| |
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|
| T |
23922262 |
tttattcatgaaatataaatttatttatttatagatggcctccggctatcaatacaatatcattatataactgcatctcatgattcaatgtagcaatggc |
23922361 |
T |
|
| Q |
285 |
agaaatattaacaatcttttcattagctaagctacgttcgcacatgtcgactgcatcaccagcatatttga |
355 |
Q |
| |
|
||| |||||||| |||||||| |||||||||| ||| ||| | | | |||||||| ||||||||||| |
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| T |
23922362 |
agacgtattaacattcttttcacgagctaagctatcttcacacctaccaagtgcatcactagcatatttga |
23922432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 318
Target Start/End: Original strand, 23914625 - 23914758
Alignment:
| Q |
185 |
tttattcattcaatataaattttttgattcatagatgacctccagctatcactacaatatcagcatacaactccatctcatgattcagtgtagcaatgga |
284 |
Q |
| |
|
||||||||| |||||||||| || ||| ||||||| ||| | ||||||| |||||||||| ||| |||| |||||||||||||| ||||||||||| |
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|
| T |
23914625 |
tttattcatgaaatataaattaatttatttatagatggcctgcggctatcaatacaatatcattatataactgcatctcatgattcaatgtagcaatggc |
23914724 |
T |
|
| Q |
285 |
agaaatattaacaatcttttcattagctaagcta |
318 |
Q |
| |
|
||| |||||||| |||||||| |||||||||| |
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|
| T |
23914725 |
agacgtattaacattcttttcacgagctaagcta |
23914758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 327
Target Start/End: Original strand, 24435842 - 24435898
Alignment:
| Q |
271 |
agtgtagcaatggaagaaatattaacaatcttttcattagctaagctacgttcgcac |
327 |
Q |
| |
|
||||||| || ||||||| |||||||||||||||||||| |||||||| |||||||| |
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|
| T |
24435842 |
agtgtagaaagggaagaagtattaacaatcttttcattaactaagctatgttcgcac |
24435898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 215 - 404
Target Start/End: Original strand, 35079337 - 35079526
Alignment:
| Q |
215 |
atagatgacctccagctatcactacaatatcagcatacaactccatctcatgattcagtgtagcaatggaagaaatattaacaatcttttcattagctaa |
314 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||| | ||||||| |||||||||||||| || ||||||||||||| |||||||||||||||| ||||| || |
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|
| T |
35079337 |
atagatggcctccggctatgactacaatatctgtatacaacatcatctcatgattcaatgcagcaatggaagaagtattaacaatcttttcgttagccaa |
35079436 |
T |
|
| Q |
315 |
gctacgttcgcacatgtcgactgcatcaccagcatatttgacagccaaccctatcaattccggatcctcagccaatgcaccttttacctc |
404 |
Q |
| |
|
||||||||| |||||||| | |||||| | |||||||||||||||||| | ||||| |||||||||||| ||||||||||| |||||| |
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|
| T |
35079437 |
gctacgttcacacatgtcaagtgcatcgctagcatatttgacagccaagcttatcatttccggatcctcgcgcaatgcaccttgtacctc |
35079526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 200 - 413
Target Start/End: Original strand, 35074353 - 35074566
Alignment:
| Q |
200 |
taaattttttgattcatagatgacctccagctatcactacaatatcagcatacaactccatctcatgattcagtgtagcaatggaagaaatattaacaat |
299 |
Q |
| |
|
||||||| || ||| ||||||| ||||| |||||||||||||||| | || |||| ||| ||||||||||||| | ||||||||||| |||| ||||| |
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|
| T |
35074353 |
taaatttattaatttatagatggcctccggctatcactacaatatttgtgtataacttcatgtcatgattcagtgcaacaatggaagaagtattgacaat |
35074452 |
T |
|
| Q |
300 |
cttttcattagctaagctacgttcgcacatgtcgactgcatcaccagcatatttgacagccaaccctatcaattccggatcctcagccaatgcacctttt |
399 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||||| | |||||| | |||||| |||||||||| | ||||| ||||||||||||| ||||||||||| | |
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|
| T |
35074453 |
cttttcatcagccaagctacgttcacacatgtcaagtgcatcgctagcataattgacagccatgcttatcatttccggatcctcacgcaatgcaccttgt |
35074552 |
T |
|
| Q |
400 |
acctcaacaaccac |
413 |
Q |
| |
|
||||| | |||||| |
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|
| T |
35074553 |
acctcgataaccac |
35074566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 319
Target Start/End: Complemental strand, 13436259 - 13436196
Alignment:
| Q |
256 |
tccatctcatgattcagtgtagcaatggaagaaatattaacaatcttttcattagctaagctac |
319 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||| ||||||||| |
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|
| T |
13436259 |
tccatctcactattcattgtagaaatggaagaaatattaaaaatcttttcattaactaagctac |
13436196 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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